Factsheet for PGSC0003DMT400048750

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g063070.2.1	Tomato	plasma membrane	85.33	85.33
GSMUA_Achr7P06690_001	Banana	plasma membrane	31.27	50.0
VIT_07s0005g04950.t01	Wine grape	plasma membrane	51.74	48.91
KRH32282	Soybean	plasma membrane	44.79	47.54
KRH19680	Soybean	plasma membrane	43.63	46.12
GSMUA_Achr2P17910_001	Banana	plasma membrane	25.1	44.83
AT2G20230.1	Thale cress	plasma membrane	45.56	43.7
CDY31986	Canola	plasma membrane	44.79	43.45
Bra011059.1-P	Field mustard	plasma membrane	45.17	42.86
CDY06872	Canola	plasma membrane	45.17	42.86
CDY65849	Canola	plasma membrane	44.4	42.75
CDY35218	Canola	plasma membrane	44.4	42.12
TraesCS3A01G463600.1	Wheat	extracellular, mitochondrion, plasma membrane, plastid	37.45	39.43
Zm00001d028780_P001	Maize	extracellular, plasma membrane	30.5	39.11
Os06t0731400-02	Rice	golgi, plasma membrane	36.29	38.84
TraesCS3B01G506800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	36.68	38.62
TraesCS3D01G457500.3	Wheat	golgi, plasma membrane	36.29	38.21
TraesCS7B01G360400.1	Wheat	plasma membrane	36.29	37.9
TraesCS7B01G360600.1	Wheat	plasma membrane	36.29	37.9
TraesCS7D01G447700.1	Wheat	plasma membrane	35.52	36.36
EER89022	Sorghum	extracellular, plasma membrane	35.14	36.26
AT4G28770.2	Thale cress	plasma membrane	44.4	35.38
HORVU7Hr1G105880.1	Barley	plastid	36.29	31.33
PGSC0003DMT400047175	Potato	plasma membrane	25.87	30.18
PGSC0003DMT400057803	Potato	plasma membrane	23.55	28.24
PGSC0003DMT400062233	Potato	plasma membrane	32.05	25.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400048750	EnsemblPlantsGene:PGSC0003DMG400018947	EntrezGene:102584085	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR19282	PANTHER:PTHR19282:SF227	PGSC:PGSC0003DMG400018947	RefSeq:XP_006350290.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029698EB	UniProt:M1BMU7	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018947]

Coordinates

chr9:+:45562624..45570596

Molecular Weight (calculated)

29032.3 Da

IEP (calculated)

6.497

GRAVY (calculated)

0.259

Length

259 amino acids

Sequence
(BLAST)

001: MPTPCCQGFT AFLLKFLNFL QTFIGVSIII YSAYMLNHWH HHHNDVHDAQ FLNFGSIDVS NSVVLALPEL NKNSLPAPWF IYAFMGIGVI LCCITCIGHV
101: GAEAVNGCCL CFYSLLMMTF VLLEVSLVAF IAIDHHWEKD LPTDPTGELH SLRTFIQQNM DVCKWIGIVV VVIQAFSLFL AVVLRTLVSS PKLNYDMEGD
201: YDVVGRTREP LLDPRLSQTS GLAKGDARGG HSDIWSSRMR EKYHLDGEAR HHIPNPNPS

Best Arabidopsis Sequence Match ( AT2G20230.1 )
(BLAST)

001: MRRNCCHVSF ASTLKILNFV QAFIGVSIII YSIWMLHEYS RHLPVDPPPS ASSSSGTEIA TSVSEPLKNP IDFVASIILG SNGGDHGFNL RSLDLPAPWF
101: IYSFMAVGIL VCIVTFIGFI AAEAINGCCL CFYSILKTLL ILLEAALVAY IAIDRHWEKD LPYDPTGELS SLRAFIEENI DICKWVGIAV VAVQLLSLLL
201: AMVLRAMVST PKPELDEEED DENPRSRTWD PLLGPQGNQA PAGSSKIENW SSRIREKYGL NQSPPVNPKG

Arabidopsis Description

TOM2AH2Tetraspanin-18 [Source:UniProtKB/Swiss-Prot;Acc:Q93XY5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.