Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- plasma membrane 6
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g078450.2.1 | Tomato | plasma membrane | 87.96 | 87.96 |
| VIT_00s0583g00020.t01 | Wine grape | plasma membrane | 45.83 | 46.92 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 40.28 | 43.5 |
| GSMUA_Achr10P... | Banana | plasma membrane | 38.43 | 43.23 |
| Zm00001d001811_P001 | Maize | plasma membrane | 40.74 | 40.74 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 33.33 | 40.45 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 39.81 | 40.0 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 39.35 | 39.53 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 39.81 | 39.27 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 37.04 | 38.84 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 38.43 | 38.25 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 38.89 | 37.84 |
| Zm00001d026634_P002 | Maize | mitochondrion | 32.41 | 31.82 |
| GSMUA_Achr11P... | Banana | plasma membrane | 36.57 | 23.65 |
| PGSC0003DMT400048750 | Potato | plasma membrane | 28.24 | 23.55 |
| PGSC0003DMT400062233 | Potato | plasma membrane | 24.54 | 15.96 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057803 | EnsemblPlantsGene:PGSC0003DMG400022440 | EntrezGene:102597946 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tetraspanin | InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF158 | PFAM:PF00335 | PGSC:PGSC0003DMG400022440 |
| PRINTS:PR00259 | RefSeq:XP_006347059.2 | RefSeq:XP_015164150.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002949725 |
| UniProt:M1C1P8 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022440]
Coordinates
chr2:+:34120454..34122690
Molecular Weight (calculated)
24193.4 Da
IEP (calculated)
4.662
GRAVY (calculated)
0.326
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLVKSCLR LSLKITNITI GFMGIAMLIY GIWMIRVWQR DAANSPSSPD YAQFPWFIHA FLGVGTALCA ITFLGHVAAN SSNSYCLSLY MFIIFVLLLA
101: EIAITADVFL NSDWEKDLPE DPSGRFDDFK DFVDSNSDIC QWIALLCVLT QGCCILLATI LRTLGQVKEN SHEYEGEYAE PSAPLLRPPE LPPNPLYPYV
201: IGEPVHIEPH SVYKNV
101: EIAITADVFL NSDWEKDLPE DPSGRFDDFK DFVDSNSDIC QWIALLCVLT QGCCILLATI LRTLGQVKEN SHEYEGEYAE PSAPLLRPPE LPPNPLYPYV
201: IGEPVHIEPH SVYKNV
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.