Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 9
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 48.34 | 51.0 |
| GSMUA_Achr10P... | Banana | plasma membrane | 44.55 | 48.96 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 46.92 | 48.06 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 46.92 | 46.7 |
| PGSC0003DMT400057803 | Potato | plasma membrane | 46.92 | 45.83 |
| Solyc02g078450.2.1 | Tomato | plasma membrane | 46.45 | 45.37 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 46.45 | 44.75 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 45.97 | 44.7 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 36.97 | 43.82 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 44.55 | 43.72 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 43.6 | 42.79 |
| Zm00001d001811_P001 | Maize | plasma membrane | 43.6 | 42.59 |
| Zm00001d026634_P002 | Maize | mitochondrion | 40.76 | 39.09 |
| GSMUA_Achr11P... | Banana | plasma membrane | 48.34 | 30.54 |
| VIT_07s0005g04950.t01 | Wine grape | plasma membrane | 36.97 | 28.47 |
| VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 30.81 | 23.21 |
Protein Annotations
| EntrezGene:100854362 | wikigene:100854362 | MapMan:35.1 | ProteinID:CBI25876 | ProteinID:CBI25876.3 | UniProt:D7T5U3 |
| EMBL:FN595559 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100854362 | wikigene:LOC100854362 |
| PFAM:PF00335 | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF221 | TMHMM:TMhelix | InterPro:Tetraspanin/Peripherin | UniParc:UPI0001BE2E16 |
| ArrayExpress:VIT_00s0583g00020 | EnsemblPlantsGene:VIT_00s0583g00020 | EnsemblPlants:VIT_00s0583g00020.t01 | RefSeq:XP_003635421 | RefSeq:XP_003635421.1 | RefSeq:XP_003635421.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:32324549..32326357
Molecular Weight (calculated)
23641.8 Da
IEP (calculated)
4.597
GRAVY (calculated)
0.308
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MARLVKSFLQ SMLKLVNLVM GMVGVTIILY GLWMMRVWQR DMQGTSSDSF EPPHFPWFIW ASIITGISFC VITSIGHIAA DTVNGHCLSC YMVILVSLLL
101: LETALAADIF LNSDWEKDLP EDPTGRFDDF KDFVNSNIEM FQWIGLLIVL AQGISILLAM VLRTTERGQA SNYDSDDAYT TARNPLLNGP VQPLPYVAND
201: AWTVGHDSMK K
101: LETALAADIF LNSDWEKDLP EDPTGRFDDF KDFVNSNIEM FQWIGLLIVL AQGISILLAM VLRTTERGQA SNYDSDDAYT TARNPLLNGP VQPLPYVAND
201: AWTVGHDSMK K
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.