Factsheet for Zm00001d001811_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 3
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20740.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT2G20740.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0679900-01	Rice	mitochondrion, plasma membrane	72.22	71.89
Zm00001d026634_P002	Maize	mitochondrion	70.37	69.09
TraesCS2B01G596400.1	Wheat	mitochondrion, plasma membrane	65.28	65.58
TraesCS2A01G587000.1	Wheat	plasma membrane	64.35	64.65
GSMUA_Achr10P...	Banana	plasma membrane	55.09	61.98
HORVU2Hr1G118680.7	Barley	endoplasmic reticulum	49.07	59.55
GSMUA_Achr1P02970_001	Banana	plasma membrane	50.93	55.0
VIT_12s0059g00180.t01	Wine grape	golgi, mitochondrion, plasma membrane	49.54	50.47
GSMUA_Achr5P10780_001	Banana	extracellular, plasma membrane	47.69	50.0
KRH55976	Soybean	plasma membrane	48.61	49.76
KRH25560	Soybean	plasma membrane	47.69	49.05
PGSC0003DMT400047175	Potato	plasma membrane	49.54	48.2
Solyc07g054160.2.1	Tomato	plasma membrane	49.07	47.75
CDY05788	Canola	plasma membrane	44.91	45.33
Bra036498.1-P	Field mustard	plasma membrane	43.52	43.93
CDY31941	Canola	plasma membrane	43.52	43.93
VIT_00s0583g00020.t01	Wine grape	plasma membrane	42.59	43.6
AT2G20740.1	Thale cress	plasma membrane	42.13	41.18
PGSC0003DMT400057803	Potato	plasma membrane	40.74	40.74
Solyc02g078450.2.1	Tomato	plasma membrane	39.81	39.81
GSMUA_Achr11P...	Banana	plasma membrane	54.63	35.33
Zm00001d028780_P001	Maize	extracellular, plasma membrane	26.85	28.71
Zm00001d049526_P002	Maize	golgi, plasma membrane, vacuole	22.22	17.39
Zm00001d030014_P011	Maize	plasma membrane	20.83	16.13
Zm00001d047059_P004	Maize	golgi, plasma membrane, vacuole	20.83	13.93

Protein Annotations

EMBL:BT035010	EnsemblPlants:Zm00001d001811_P001	EnsemblPlants:Zm00001d001811_T001	EnsemblPlantsGene:Zm00001d001811	EntrezGene:100192904	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR19282	PANTHER:PTHR19282:SF158	ProteinID:ONM12057.1	TMHMM:TMhelix
UniParc:UPI00017B6588	UniProt:B4FD22	MapMan:35.1	:	:	:

Description

Tetraspanin-19

Coordinates

chr2:+:1331499..1334757

Molecular Weight (calculated)

23862.0 Da

IEP (calculated)

6.337

GRAVY (calculated)

0.268

Length

216 amino acids

Sequence
(BLAST)

001: MAGRMVRSCV QTALKAANSV VGLAGMAVIL YALWMLRAWY REIAGLGQRP PAPWFIYTFL GLGIFLCILT CSGHIAAETA NGHCLYCYMT IVFMLIILEG
101: AITLDVFLNS NWEEGFPPDP SGKFGDFKHF VRSNSEICEW VGLSVVAAQV LSIVLGMVLR TLGPDRETDY DSEDDTAVPA RLPLLRNQSQ HGSWDYAEAT
201: TSRQGLPLLH SKCVQR

Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)

001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R

Arabidopsis Description

TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.