Factsheet for PGSC0003DMT400047175

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 6
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20740.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT2G20740.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G20740.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT2G20740.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G20740.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054160.2.1	Tomato	plasma membrane	95.05	95.05
VIT_12s0059g00180.t01	Wine grape	golgi, mitochondrion, plasma membrane	59.46	62.26
KRH25560	Soybean	plasma membrane	57.66	60.95
KRH55976	Soybean	plasma membrane	57.66	60.66
AT2G20740.1	Thale cress	plasma membrane	56.76	57.01
GSMUA_Achr10P...	Banana	plasma membrane	49.1	56.77
Bra036498.1-P	Field mustard	plasma membrane	54.5	56.54
CDY31941	Canola	plasma membrane	54.5	56.54
GSMUA_Achr1P02970_001	Banana	plasma membrane	49.1	54.5
CDY05788	Canola	plasma membrane	50.9	52.8
GSMUA_Achr5P10780_001	Banana	extracellular, plasma membrane	47.75	51.46
TraesCS2B01G596400.1	Wheat	mitochondrion, plasma membrane	49.55	51.16
HORVU2Hr1G118680.7	Barley	endoplasmic reticulum	40.99	51.12
TraesCS2A01G587000.1	Wheat	plasma membrane	49.1	50.7
EES13114	Sorghum	mitochondrion, plasma membrane	49.1	49.77
Zm00001d001811_P001	Maize	plasma membrane	48.2	49.54
Os04t0679900-01	Rice	mitochondrion, plasma membrane	47.75	48.85
Zm00001d026634_P002	Maize	mitochondrion	44.59	45.0
PGSC0003DMT400057803	Potato	plasma membrane	37.84	38.89
GSMUA_Achr11P...	Banana	plasma membrane	50.9	33.83
PGSC0003DMT400048750	Potato	plasma membrane	30.18	25.87
PGSC0003DMT400062233	Potato	plasma membrane	31.08	20.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400047175	EnsemblPlantsGene:PGSC0003DMG400018311	EntrezGene:102598654	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Tetraspanin/Peripherin	PANTHER:PTHR19282	PANTHER:PTHR19282:SF158	PFAM:PF00335	PGSC:PGSC0003DMG400018311	RefSeq:XP_006357492.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000296C7E5	UniProt:M1BK84	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018311]

Coordinates

chr7:-:48998696..49002579

Molecular Weight (calculated)

25084.9 Da

IEP (calculated)

6.894

GRAVY (calculated)

0.257

Length

222 amino acids

Sequence
(BLAST)

001: MTRMARSCMQ SLLKVVNSVI GMVGIAMILY ALWMFRVWHK QMGPYPPPFF GPDAPAPWFI YATLGLGITL SIVTCSGHIA AETANGCCLY IYMVFVFLLL
101: MIEAAVTVDV FLNRNWQEDF PKDTTGNFDE LKHFVKDNFD ICKWIGLSVV TVQGLTILLA MILKALGPHQ ERCYYESDDD YMPDRVPLLK SYVPSSSYVV
201: GDPMYGPKND AWNIRINSKV GR

Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)

001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R

Arabidopsis Description

TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.