Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- plasma membrane 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20740.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 62.5 | 60.0 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 60.42 | 56.31 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 63.54 | 56.22 |
| Zm00001d001811_P001 | Maize | plasma membrane | 61.98 | 55.09 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 62.5 | 54.79 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 60.94 | 54.42 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 60.94 | 54.42 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 50.0 | 53.93 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 57.81 | 52.36 |
| Solyc07g054160.2.1 | Tomato | plasma membrane | 57.29 | 49.55 |
| KRH55976 | Soybean | plasma membrane | 54.17 | 49.29 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 56.77 | 49.1 |
| Zm00001d026634_P002 | Maize | mitochondrion | 56.25 | 49.09 |
| KRH25560 | Soybean | plasma membrane | 53.65 | 49.05 |
| VIT_00s0583g00020.t01 | Wine grape | plasma membrane | 48.96 | 44.55 |
| CDY05788 | Canola | plasma membrane | 49.48 | 44.39 |
| AT2G20740.1 | Thale cress | plasma membrane | 50.52 | 43.89 |
| GSMUA_Achr11P... | Banana | plasma membrane | 75.52 | 43.41 |
| Bra036498.1-P | Field mustard | plasma membrane | 47.92 | 42.99 |
| CDY31941 | Canola | plasma membrane | 47.92 | 42.99 |
| Solyc02g078450.2.1 | Tomato | plasma membrane | 44.27 | 39.35 |
| PGSC0003DMT400057803 | Potato | plasma membrane | 43.23 | 38.43 |
| GSMUA_Achr7P06690_001 | Banana | plasma membrane | 30.21 | 35.8 |
| GSMUA_Achr2P17910_001 | Banana | plasma membrane | 20.83 | 27.59 |
| GSMUA_Achr1P00640_001 | Banana | plasma membrane | 27.6 | 19.27 |
| GSMUA_Achr4P20930_001 | Banana | golgi, plasma membrane, vacuole | 27.6 | 18.73 |
| GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 27.6 | 18.66 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 26.56 | 18.02 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 8.85 | 13.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P06830_001 | EnsemblPlants:GSMUA_Achr10T06830_001 | EnsemblPlantsGene:GSMUA_Achr10G06830_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF158 | PFAM:PF00335 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000296784C | UniProt:M0RG10 | MapMan:35.1 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G06830_001]
Coordinates
chr10:+:17135494..17139815
Molecular Weight (calculated)
21499.2 Da
IEP (calculated)
4.349
GRAVY (calculated)
0.427
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWWVRSCLQ SVLKMLNSMI GLTGMGMILY ALWMLRSWYK HLDGTSFGVS GSTPPWFIYT FLGLGISLCL ITCAGHIAAE TANSYCLSCY MVFVFLFITL
101: EAAITAFIFL NRDWEEDFPE DPTGEFNELK NFVKSNFEMC EWIGLLVVAT QALSIFAAMV LRALGPDSGT DCDSDDDAIP ARLPLLRNQV NR
101: EAAITAFIFL NRDWEEDFPE DPTGEFNELK NFVKSNFEMC EWIGLLVVAT QALSIFAAMV LRALGPDSGT DCDSDDDAIP ARLPLLRNQV NR
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.