Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 8
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 77.03 | 76.76 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 76.68 | 76.68 |
| GSMUA_Achr1P00640_001 | Banana | plasma membrane | 69.61 | 71.64 |
| Os08t0282000-01 | Rice | plasma membrane | 68.2 | 67.96 |
| KXG38876 | Sorghum | plasma membrane | 65.72 | 66.67 |
| TraesCS1D01G133700.1 | Wheat | plasma membrane | 67.14 | 66.67 |
| Zm00001d030014_P011 | Maize | plasma membrane | 65.37 | 66.31 |
| TraesCS1A01G137700.2 | Wheat | plasma membrane | 66.43 | 65.96 |
| TraesCS1B01G148900.1 | Wheat | golgi, plasma membrane, vacuole | 66.43 | 65.96 |
| HORVU1Hr1G034980.1 | Barley | plasma membrane | 66.08 | 65.61 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 27.92 | 62.2 |
| Solyc08g077220.2.1 | Tomato | golgi, plasma membrane, vacuole | 59.72 | 59.51 |
| KRH77234 | Soybean | golgi, plasma membrane, vacuole | 58.66 | 58.66 |
| KRH04302 | Soybean | endoplasmic reticulum | 57.24 | 58.48 |
| KRH28260 | Soybean | golgi, plasma membrane, vacuole | 58.3 | 58.3 |
| KRH57584 | Soybean | plasma membrane | 49.82 | 58.26 |
| Bra010162.1-P | Field mustard | plasma membrane | 56.18 | 56.99 |
| AT1G32400.3 | Thale cress | plasma membrane | 56.18 | 56.79 |
| Zm00001d047059_P004 | Maize | golgi, plasma membrane, vacuole | 64.31 | 56.35 |
| VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 55.12 | 55.71 |
| CDX93836 | Canola | plasma membrane | 54.42 | 54.8 |
| Bra023264.1-P | Field mustard | plasma membrane | 54.42 | 54.8 |
| CDY01278 | Canola | plasma membrane | 53.71 | 54.09 |
| EES13397 | Sorghum | plasma membrane | 51.94 | 53.65 |
| TraesCS7A01G299900.1 | Wheat | plasma membrane | 50.18 | 52.79 |
| TraesCS7D01G294800.2 | Wheat | plasma membrane | 50.18 | 52.79 |
| TraesCS7B01G187200.1 | Wheat | plasma membrane | 49.82 | 52.42 |
| HORVU7Hr1G070700.3 | Barley | vacuole | 49.82 | 52.42 |
| PGSC0003DMT400062233 | Potato | plasma membrane | 60.07 | 51.2 |
| Os08t0159100-01 | Rice | plasma membrane | 47.7 | 48.56 |
| CDY48874 | Canola | plasma membrane | 56.18 | 46.22 |
| Zm00001d049526_P002 | Maize | golgi, plasma membrane, vacuole | 43.82 | 44.93 |
| CDY32286 | Canola | plasma membrane | 56.89 | 43.51 |
| GSMUA_Achr2P17910_001 | Banana | plasma membrane | 18.02 | 35.17 |
| GSMUA_Achr10P... | Banana | plasma membrane | 18.73 | 27.6 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 18.73 | 26.5 |
| GSMUA_Achr7P06690_001 | Banana | plasma membrane | 14.84 | 25.93 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 16.96 | 23.3 |
| GSMUA_Achr11P... | Banana | plasma membrane | 19.08 | 16.17 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P20930_001 | EnsemblPlants:GSMUA_Achr4T20930_001 | EnsemblPlantsGene:GSMUA_Achr4G20930_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF268 | PFAM:PF00335 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295424B | UniProt:M0SQQ6 | MapMan:26.10.2.2 | : | : | : |
Description
tetraspanin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G20930_001]
Coordinates
chr4:-:21471225..21478809
Molecular Weight (calculated)
31384.8 Da
IEP (calculated)
4.696
GRAVY (calculated)
0.223
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRGLWECL LKLLNFLLTL TGLAMVGYGA YLLVEWNRVS SSDDDDEPIS PTGDNPEFLT FGRPMLVAVS LSSSFLDKLP KAWFIYLIIG IGVVLFIISC
101: FGFIGAVSRN GCCLSCYSFL VILLILVELG AAAFIFFDHS WKHIIPVDKT GNFDVIYDFL EENWKIAKWV ALGAVILEAL VFLLALIVRA ANRPVEYDSD
201: DEYIAQSSGI RQPLINQQGA PATGMPVSGT LDQRPSRHDA WSQRMREKYG LDTSKFTYNS SDPNRSQQSA TPSSEERGGC NIL
101: FGFIGAVSRN GCCLSCYSFL VILLILVELG AAAFIFFDHS WKHIIPVDKT GNFDVIYDFL EENWKIAKWV ALGAVILEAL VFLLALIVRA ANRPVEYDSD
201: DEYIAQSSGI RQPLINQQGA PATGMPVSGT LDQRPSRHDA WSQRMREKYG LDTSKFTYNS SDPNRSQQSA TPSSEERGGC NIL
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.