Factsheet for GSMUA_Achr11P07500_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20740.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plasma membrane	43.41	75.52
GSMUA_Achr1P02970_001	Banana	plasma membrane	36.83	61.5
TraesCS2B01G596400.1	Wheat	mitochondrion, plasma membrane	37.13	57.67
Os04t0679900-01	Rice	mitochondrion, plasma membrane	37.43	57.6
HORVU2Hr1G118680.7	Barley	endoplasmic reticulum	30.54	57.3
GSMUA_Achr5P10780_001	Banana	extracellular, plasma membrane	35.33	57.28
TraesCS2A01G587000.1	Wheat	plasma membrane	36.53	56.74
EES13114	Sorghum	mitochondrion, plasma membrane	36.23	55.25
Zm00001d001811_P001	Maize	plasma membrane	35.33	54.63
VIT_12s0059g00180.t01	Wine grape	golgi, mitochondrion, plasma membrane	34.13	53.77
Solyc07g054160.2.1	Tomato	plasma membrane	34.43	51.8
KRH55976	Soybean	plasma membrane	32.34	51.18
PGSC0003DMT400047175	Potato	plasma membrane	33.83	50.9
KRH25560	Soybean	plasma membrane	31.74	50.48
Zm00001d026634_P002	Maize	mitochondrion	33.23	50.45
VIT_00s0583g00020.t01	Wine grape	plasma membrane	30.54	48.34
CDY05788	Canola	plasma membrane	30.54	47.66
Bra036498.1-P	Field mustard	plasma membrane	29.64	46.26
CDY31941	Canola	plasma membrane	29.64	46.26
AT2G20740.1	Thale cress	plasma membrane	29.04	43.89
GSMUA_Achr7P06690_001	Banana	plasma membrane	18.56	38.27
Solyc02g078450.2.1	Tomato	plasma membrane	24.55	37.96
PGSC0003DMT400057803	Potato	plasma membrane	23.65	36.57
GSMUA_Achr2P17910_001	Banana	plasma membrane	12.28	28.28
GSMUA_Achr4P26390_001	Banana	golgi, plasma membrane, vacuole	17.96	21.13
GSMUA_Achr1P00640_001	Banana	plasma membrane	16.47	20.0
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, vacuole	16.77	19.79
GSMUA_Achr4P20930_001	Banana	golgi, plasma membrane, vacuole	16.17	19.08
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	5.39	14.17

Protein Annotations

EnsemblPlants:GSMUA_Achr11P07500_001	EnsemblPlants:GSMUA_Achr11T07500_001	EnsemblPlantsGene:GSMUA_Achr11G07500_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR19282	PANTHER:PTHR19282:SF158	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002955F2A	UniProt:M0RQ80
MapMan:35.1	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G07500_001]

Coordinates

chr11:-:5863258..5870944

Molecular Weight (calculated)

37163.5 Da

IEP (calculated)

6.162

GRAVY (calculated)

0.295

Length

334 amino acids

Sequence
(BLAST)

001: MCRPHPQPLK VRSLFPYQAF DTHLLNLLLV SVGPMVHLES EGGDVETRSL SASPQTKTSL VEIEKAAIRH PLLLRVTEKS HPFLVLICSS GGLPLVSRLK
101: VGFWALGFRL LVLAIVGEEE GGRERGRMGW WLRSCLQSVL KLVNSVMGLA GMGVILYSLW MLRSWYKHFD GSSFAGAVSS PPWFIYAFLG LGIYLCLITC
201: SGHIAAETAN GQCLSCYMAF VFLLVMMEAA LIADIFLNRE WEEDFPEDPT GKFDELKNFV RSNFEMCKWI GLLVVAAQAF SIFTAMVLRA LGPDSSIDYD
301: SDDDFVPARL PLLRNEVQQT YQTAAPSLSL KIDS

Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)

001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R

Arabidopsis Description

TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.