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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 8
  • golgi 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G20740.1 Bra030034.1-P AT1G27300.1 21798944
AT2G20740.1 Bra032817.1-P AT1G27300.1 21798944
AT2G20740.1 Bra012567.1-P AT4G19030.1 21798944
AT2G20740.1 Bra013361.1-P AT4G19030.1 21798944
AT2G20740.1 Bra002403.1-P AT5G22290.1 21798944
AT2G20740.1 Bra006619.1-P AT5G22290.1 21798944
AT2G20740.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31941 Canola plasma membrane 100.0 100.0
AT2G20740.1 Thale cress plasma membrane 78.97 76.47
VIT_12s0059g00180.t01 Wine grape golgi, mitochondrion, plasma membrane 57.48 58.02
KRH25560 Soybean plasma membrane 54.67 55.71
KRH55976 Soybean plasma membrane 54.21 54.98
Solyc07g054160.2.1 Tomato plasma membrane 56.54 54.5
PGSC0003DMT400047175 Potato plasma membrane 56.54 54.5
GSMUA_Achr5P10780_001 Banana extracellular, plasma membrane 49.53 51.46
GSMUA_Achr1P02970_001 Banana plasma membrane 46.26 49.5
GSMUA_Achr10P... Banana plasma membrane 42.99 47.92
TraesCS2A01G587000.1 Wheat plasma membrane 47.2 46.98
TraesCS2B01G596400.1 Wheat mitochondrion, plasma membrane 46.73 46.51
EES13114 Sorghum mitochondrion, plasma membrane 46.26 45.21
Os04t0679900-01 Rice mitochondrion, plasma membrane 45.79 45.16
Zm00001d001811_P001 Maize plasma membrane 43.93 43.52
HORVU2Hr1G118680.7 Barley endoplasmic reticulum 35.98 43.26
Zm00001d026634_P002 Maize mitochondrion 41.59 40.45
GSMUA_Achr11P... Banana plasma membrane 46.26 29.64
Bra011059.1-P Field mustard plasma membrane 33.18 26.01
Bra010162.1-P Field mustard plasma membrane 30.37 23.3
Bra023264.1-P Field mustard plasma membrane 29.44 22.42
Protein Annotations
EnsemblPlants:Bra036498.1EnsemblPlants:Bra036498.1-PEnsemblPlantsGene:Bra036498GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR19282PANTHER:PTHR19282:SF158TMHMM:TMhelixUniParc:UPI0002540E52UniProt:M4F5Y9MapMan:35.1
Description
AT2G20740 (E=2e-100) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 91 Blast hits to 91 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Coordinates
chrA07:-:61913..63149
Molecular Weight (calculated)
24050.5 Da
IEP (calculated)
7.388
GRAVY (calculated)
0.332
Length
214 amino acids
Sequence
(BLAST)
001: MVRMVRSCLQ SMLKLVNSLL GMVGVAVILY AVWLIRQWQQ QTGSLPFSHP LPWFISAFLC LGALLCLVTC AGHIAAETVN GCCLYFYMGF IVLLIMVEGG
101: VIADTFLNPD WKQDFPEDPT GAFYRFSKFV ESNYKICRWI GLSIVSVQGA SVLLAMLLKA LGPHRHYDSD DEYDVSTVAL LRDARQPHPY VVGEPIYGPK
201: PDSWTVRINE RANR
Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.