Factsheet for Bra011059.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 6
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35218	Canola	plasma membrane	83.15	83.15
AT4G28770.2	Thale cress	plasma membrane	78.02	65.54
VIT_07s0005g04950.t01	Wine grape	plasma membrane	52.38	52.19
GSMUA_Achr7P06690_001	Banana	plasma membrane	30.77	51.85
KRH19680	Soybean	plasma membrane	45.79	51.02
KRH32282	Soybean	plasma membrane	45.05	50.41
PGSC0003DMT400048750	Potato	plasma membrane	42.86	45.17
Solyc09g063070.2.1	Tomato	plasma membrane	41.76	44.02
GSMUA_Achr2P17910_001	Banana	plasma membrane	23.08	43.45
Zm00001d028780_P001	Maize	extracellular, plasma membrane	29.3	39.6
TraesCS3D01G457500.3	Wheat	golgi, plasma membrane	33.7	37.4
TraesCS3B01G506800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	32.97	36.59
TraesCS3A01G463600.1	Wheat	extracellular, mitochondrion, plasma membrane, plastid	32.97	36.59
Os06t0731400-02	Rice	golgi, plasma membrane	32.23	36.36
EER89022	Sorghum	extracellular, plasma membrane	33.33	36.26
TraesCS7B01G360400.1	Wheat	plasma membrane	31.5	34.68
TraesCS7B01G360600.1	Wheat	plasma membrane	31.5	34.68
TraesCS7D01G447700.1	Wheat	plasma membrane	31.14	33.6
Bra036498.1-P	Field mustard	plasma membrane	26.01	33.18
HORVU7Hr1G105880.1	Barley	plastid	34.07	31.0
Bra010162.1-P	Field mustard	plasma membrane	27.84	27.24
Bra023264.1-P	Field mustard	plasma membrane	26.37	25.62

Protein Annotations

EnsemblPlants:Bra011059.1	EnsemblPlants:Bra011059.1-P	EnsemblPlantsGene:Bra011059	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0016020	GO:GO:0016021	InterPro:Tetraspanin
PANTHER:PTHR19282	PANTHER:PTHR19282:SF227	PRINTS:PR00259	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025458E6
UniProt:M4D3K5	MapMan:35.1	:	:	:	:

Description

AT4G28770 (E=3e-105) | FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA01:+:4171266..4172671

Molecular Weight (calculated)

30249.6 Da

IEP (calculated)

5.020

GRAVY (calculated)

0.242

Length

273 amino acids

Sequence
(BLAST)

001: MRHNCCHLSF ASVLKILNFL QAFIGISIII YSIWMLDQYN RHVPVDPPPS QPPTASSPDS PYLFSTSRIQ INSVSDSFQK PIGLVLGDSG LNLRSLDLPA
101: PWFIYCFMAI GILVCIVTII GFIAAEAING CCLCFYSILK TLVIILEAAL VGFIAIDRHW EKDLPYDPTG ELTSLRAFIE ANIDICKWVG VGVVAVQLLS
201: LLLAMVLRAM VSPRQSDLDD EDDYENPINR ARENLLAPQA NQTSSGSSNI DNWRSRIREK YGLNNGQSQS PSV

Best Arabidopsis Sequence Match ( AT4G28770.2 )
(BLAST)

001: MSSSEYILSV KTTFFCFVRN HQRLFLRRSL LRSLISISRI VIEKMRHNCC HVSFASILKI LNFLQAFIGI SIIIYSIWML DQYNHHVPVD PPPSQPPAAS
101: SPDSSYSFSN SIIEINSVSD SLKNPIDFVS GIVLGSGGGD SGFNLRSLDL PAPWFIYCFM AIGILVCIVT IIGFIAAEAI NGCCLCFYSI LKTLLIIIEA
201: ALVGFIVIDR HWEKDLPYDP TGELNSLRAF IEENIDICKW VGIVVVAIQL LSLLLALVLR AMVSPRQSEL DDEDDFENPM SRARDNLLGP QANQTSSGSS
301: NIDNWRSRIR EKYGLINSQS HTPSA

Arabidopsis Description

Tetraspanin family protein [Source:UniProtKB/TrEMBL;Acc:F4JM26]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.