Factsheet for Solyc07g054160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 6
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20740.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT2G20740.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G20740.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT2G20740.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G20740.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047175	Potato	plasma membrane	95.05	95.05
VIT_12s0059g00180.t01	Wine grape	golgi, mitochondrion, plasma membrane	59.91	62.74
KRH25560	Soybean	plasma membrane	56.31	59.52
KRH55976	Soybean	plasma membrane	56.31	59.24
GSMUA_Achr10P...	Banana	plasma membrane	49.55	57.29
AT2G20740.1	Thale cress	plasma membrane	56.76	57.01
Bra036498.1-P	Field mustard	plasma membrane	54.5	56.54
CDY31941	Canola	plasma membrane	54.5	56.54
GSMUA_Achr1P02970_001	Banana	plasma membrane	49.55	55.0
CDY05788	Canola	plasma membrane	50.9	52.8
GSMUA_Achr5P10780_001	Banana	extracellular, plasma membrane	48.2	51.94
HORVU2Hr1G118680.7	Barley	endoplasmic reticulum	40.54	50.56
TraesCS2B01G596400.1	Wheat	mitochondrion, plasma membrane	48.65	50.23
TraesCS2A01G587000.1	Wheat	plasma membrane	48.2	49.77
Zm00001d001811_P001	Maize	plasma membrane	47.75	49.07
EES13114	Sorghum	mitochondrion, plasma membrane	48.2	48.86
Os04t0679900-01	Rice	mitochondrion, plasma membrane	47.3	48.39
Zm00001d026634_P002	Maize	mitochondrion	43.24	43.64
Solyc02g078450.2.1	Tomato	plasma membrane	38.29	39.35
GSMUA_Achr11P...	Banana	plasma membrane	51.8	34.43
Solyc09g063070.2.1	Tomato	plasma membrane	29.73	25.48
Solyc08g077220.2.1	Tomato	golgi, plasma membrane, vacuole	31.53	24.65

Protein Annotations

EnsemblPlants:Solyc07g054160.2.1	EnsemblPlantsGene:Solyc07g054160.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Tetraspanin/Peripherin
PANTHER:PTHR19282	PANTHER:PTHR19282:SF158	PFAM:PF00335	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276C3F7
UniProt:K4CFW1	MapMan:35.1	:	:	:	:

Description

Tetraspanin-19 [Source:Projected from Arabidopsis thaliana (AT2G20740) UniProtKB/Swiss-Prot;Acc:Q940P5]

Coordinates

chr7:+:62519651..62523415

Molecular Weight (calculated)

25129.8 Da

IEP (calculated)

6.094

GRAVY (calculated)

0.277

Length

222 amino acids

Sequence
(BLAST)

001: MTRMARSCMQ SLLKLVNSVI GMVGIAMIMY ALWMFRVWHK QIGPYPPPFF GPDVPAPWFI YATLGLGITL SIVTCSGHIA AETANGCCLY IYMVFVFLLL
101: MIEAAVTVDV FLNRNWQEDF PEDTTGNFDE LKHFVKDNFD ICKWIGLSVV TVQGLTILFA MILKALGPHQ ERCYYESDDD YIPDRVPLLK SYVPSSSYVV
201: GDPMYGPKND AWNIRINSKA AR

Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)

001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R

Arabidopsis Description

TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.