Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31941 | Canola | plasma membrane | 91.12 | 91.12 |
| AT2G20740.1 | Thale cress | plasma membrane | 73.83 | 71.49 |
| KRH25560 | Soybean | plasma membrane | 55.61 | 56.67 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 55.14 | 55.66 |
| KRH55976 | Soybean | plasma membrane | 54.67 | 55.45 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 50.47 | 52.43 |
| Solyc07g054160.2.1 | Tomato | plasma membrane | 52.8 | 50.9 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 52.8 | 50.9 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 46.26 | 49.5 |
| GSMUA_Achr10P... | Banana | plasma membrane | 44.39 | 49.48 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 47.2 | 46.54 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 46.73 | 46.51 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 47.2 | 46.12 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 46.26 | 46.05 |
| Zm00001d001811_P001 | Maize | plasma membrane | 45.33 | 44.91 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 35.98 | 43.26 |
| Zm00001d026634_P002 | Maize | mitochondrion | 42.06 | 40.91 |
| GSMUA_Achr11P... | Banana | plasma membrane | 47.66 | 30.54 |
| CDY35218 | Canola | plasma membrane | 33.64 | 26.37 |
| CDY31986 | Canola | plasma membrane | 32.24 | 25.84 |
| CDY06872 | Canola | plasma membrane | 32.71 | 25.64 |
| CDY65849 | Canola | plasma membrane | 31.31 | 24.91 |
| CDY01278 | Canola | plasma membrane | 29.44 | 22.42 |
| CDX93836 | Canola | plasma membrane | 28.97 | 22.06 |
| CDY48874 | Canola | plasma membrane | 29.91 | 18.6 |
| CDY32286 | Canola | plasma membrane | 29.91 | 17.3 |
Protein Annotations
| EnsemblPlants:CDY05788 | EnsemblPlantsGene:GSBRNA2T00120869001 | GO:A0A078F1Q9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF158 | PFAM:PF00335 | ProteinID:CDY05788 | ProteinID:CDY05788.1 |
| TMHMM:TMhelix | UniParc:UPI0004EDB4B7 | MapMan:35.1 | : | : | : |
Description
BnaC07g00150D
Coordinates
chrLK031964:+:1001221..1002959
Molecular Weight (calculated)
24033.5 Da
IEP (calculated)
7.386
GRAVY (calculated)
0.295
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRMVRSCLQ SMLKLVNSLL GMVGVAVILY AVWLIRQWQQ QTGSLPFSHP LPWFIYAFLC LGALLCLVTC AGHIAAETIN GCCLYFYMGF IVLLIMVEGA
101: VIADTFLNPD WKQDFPEDPT GAFYRFSKFV ESNYKICRWI GLSIVSVQGA SVLLAMLLKA LGPHRHYDSD DEYDVSTVAL LRDARQPHPY VVGEPYYGPK
201: PDSGTVRINE RANR
101: VIADTFLNPD WKQDFPEDPT GAFYRFSKFV ESNYKICRWI GLSIVSVQGA SVLLAMLLKA LGPHRHYDSD DEYDVSTVAL LRDARQPHPY VVGEPYYGPK
201: PDSGTVRINE RANR
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.