CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35218	Canola	plasma membrane	85.71	85.71
AT4G28770.2	Thale cress	plasma membrane	85.71	72.0
CDY65849	Canola	plasma membrane	69.23	70.26
CDY31986	Canola	plasma membrane	67.03	68.54
VIT_07s0005g04950.t01	Wine grape	plasma membrane	53.11	52.92
KRH32282	Soybean	plasma membrane	46.89	52.46
GSMUA_Achr7P06690_001	Banana	plasma membrane	30.4	51.23
KRH19680	Soybean	plasma membrane	45.42	50.61
PGSC0003DMT400048750	Potato	plasma membrane	42.86	45.17
GSMUA_Achr2P17910_001	Banana	plasma membrane	23.44	44.14
Solyc09g063070.2.1	Tomato	plasma membrane	41.76	44.02
Zm00001d028780_P001	Maize	extracellular, plasma membrane	30.04	40.59
TraesCS3D01G457500.3	Wheat	golgi, plasma membrane	33.7	37.4
EER89022	Sorghum	extracellular, plasma membrane	33.7	36.65
TraesCS3A01G463600.1	Wheat	extracellular, mitochondrion, plasma membrane, plastid	32.97	36.59
TraesCS3B01G506800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	32.97	36.59
Os06t0731400-02	Rice	golgi, plasma membrane	31.87	35.95
TraesCS7B01G360600.1	Wheat	plasma membrane	31.87	35.08
TraesCS7B01G360400.1	Wheat	plasma membrane	31.87	35.08
TraesCS7D01G447700.1	Wheat	plasma membrane	31.14	33.6
CDY05788	Canola	plasma membrane	25.64	32.71
CDY31941	Canola	plasma membrane	25.27	32.24
HORVU7Hr1G105880.1	Barley	plastid	34.07	31.0
CDX93836	Canola	plasma membrane	27.47	26.69
CDY01278	Canola	plasma membrane	27.11	26.33
CDY48874	Canola	plasma membrane	28.21	22.38
CDY32286	Canola	plasma membrane	28.57	21.08

Protein Annotations

EnsemblPlants:CDY06872	EnsemblPlantsGene:GSBRNA2T00123157001	GO:A0A078F148	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Tetraspanin	PANTHER:PTHR19282	PANTHER:PTHR19282:SF227	PRINTS:PR00259	ProteinID:CDY06872	ProteinID:CDY06872.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEC34C	MapMan:35.1	:	:

Description

BnaC01g09710D

Coordinates

chrLK031973:+:945762..947406

Molecular Weight (calculated)

30275.6 Da

IEP (calculated)

4.878

GRAVY (calculated)

0.240

Length

273 amino acids

Sequence
(BLAST)

001: MRHNCCHLSF ASVLKILNFL QAFIGISIII YSIWMLDQYN RHVPVDPPPS QPPTASSPDS SYLFSSSRIE INSVSDSFKK PIGLVLGDSG FDLRSLDLPA
101: PWFIYCFMAI GILVCIVTII GFIAAEAING CCLCFYSILK TLVIILEAAL VGFIAIDRHW EKDLPYDPTG ELTSLRAFIE ANIDICKWVG VGVVAIQLLS
201: LLLAMVLRAM VSPRQSDLDD EDDYENPINR ARENLLAPQA NQTSSGSSNI DNWRSRIREK YGLNNGQSQS PSV

Best Arabidopsis Sequence Match ( AT4G28770.2 )
(BLAST)

001: MSSSEYILSV KTTFFCFVRN HQRLFLRRSL LRSLISISRI VIEKMRHNCC HVSFASILKI LNFLQAFIGI SIIIYSIWML DQYNHHVPVD PPPSQPPAAS
101: SPDSSYSFSN SIIEINSVSD SLKNPIDFVS GIVLGSGGGD SGFNLRSLDL PAPWFIYCFM AIGILVCIVT IIGFIAAEAI NGCCLCFYSI LKTLLIIIEA
201: ALVGFIVIDR HWEKDLPYDP TGELNSLRAF IEENIDICKW VGIVVVAIQL LSLLLALVLR AMVSPRQSEL DDEDDFENPM SRARDNLLGP QANQTSSGSS
301: NIDNWRSRIR EKYGLINSQS HTPSA

Arabidopsis Description

Tetraspanin family protein [Source:UniProtKB/TrEMBL;Acc:F4JM26]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.