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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra010162.1-P Field mustard plasma membrane 74.32 98.57
AT1G32400.3 Thale cress plasma membrane 68.65 90.71
CDY48874 Canola plasma membrane 81.62 87.79
CDX93836 Canola plasma membrane 66.22 87.19
CDY01278 Canola plasma membrane 65.41 86.12
KRH04302 Soybean endoplasmic reticulum 52.16 69.68
KRH57584 Soybean plasma membrane 45.14 69.01
KRH77234 Soybean golgi, plasma membrane, vacuole 51.08 66.78
Solyc08g077220.2.1 Tomato golgi, plasma membrane, vacuole 50.81 66.2
KRH28260 Soybean golgi, plasma membrane, vacuole 50.27 65.72
VIT_02s0012g00560.t01 Wine grape plasma membrane 48.11 63.57
GSMUA_Achr4P20930_001 Banana golgi, plasma membrane, vacuole 43.51 56.89
PGSC0003DMT400062233 Potato plasma membrane 50.54 56.33
GSMUA_Achr11P... Banana endoplasmic reticulum, golgi 19.19 55.91
GSMUA_AchrUn_... Banana golgi, plasma membrane, vacuole 42.43 55.48
KXG38876 Sorghum plasma membrane 41.62 55.2
TraesCS1B01G148900.1 Wheat golgi, plasma membrane, vacuole 42.43 55.09
TraesCS1D01G133700.1 Wheat plasma membrane 42.43 55.09
Zm00001d030014_P011 Maize plasma membrane 41.35 54.84
TraesCS1A01G137700.2 Wheat plasma membrane 42.16 54.74
Os08t0282000-01 Rice plasma membrane 41.62 54.23
HORVU1Hr1G034980.1 Barley plasma membrane 41.62 54.04
GSMUA_Achr4P26390_001 Banana golgi, plasma membrane, vacuole 41.35 53.87
TraesCS7A01G299900.1 Wheat plasma membrane 38.11 52.42
TraesCS7B01G187200.1 Wheat plasma membrane 37.84 52.04
HORVU7Hr1G070700.3 Barley vacuole 37.84 52.04
TraesCS7D01G294800.2 Wheat plasma membrane 37.84 52.04
GSMUA_Achr1P00640_001 Banana plasma membrane 38.65 52.0
EES13397 Sorghum plasma membrane 37.3 50.37
Os08t0159100-01 Rice plasma membrane 37.57 50.0
Zm00001d047059_P004 Maize golgi, plasma membrane, vacuole 41.08 47.06
Zm00001d049526_P002 Maize golgi, plasma membrane, vacuole 32.16 43.12
CDY31941 Canola plasma membrane 17.57 30.37
CDY31986 Canola plasma membrane 21.89 30.34
CDY05788 Canola plasma membrane 17.3 29.91
CDY65849 Canola plasma membrane 20.81 28.62
CDY06872 Canola plasma membrane 21.08 28.57
CDY35218 Canola plasma membrane 20.81 28.21
Protein Annotations
EnsemblPlants:CDY32286EnsemblPlantsGene:GSBRNA2T00051754001GO:A0A078H393GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Tetraspanin/PeripherinPANTHER:PTHR19282PANTHER:PTHR19282:SF268PFAM:PF00335ProteinID:CDY32286ProteinID:CDY32286.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EDC181UniProt:A0A078H393MapMan:26.10.2.2:
Description
BnaC05g28640DBnaC05g28640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H393]
Coordinates
chrLK032291:+:193238..203090
Molecular Weight (calculated)
42030.6 Da
IEP (calculated)
5.841
GRAVY (calculated)
-0.027
Length
370 amino acids
Sequence
(BLAST)
001: MFCFYFTFGT FILETGTNND DIQQKYKTKE NSIPFPSVFL HLPLDDKDKI KTIYSDLCSK TQSFILREFF QRGEKKAEST IHKGAESLKN KMACRGCLEC
101: LLKLLNFLLA VAGLGMIGYG IYLFVEYQRA TDNNSLNFTG DDQSYVSFGR PMLMSVALSS NVFDNLPKAW FIYLFIGIGV ALFVISCCGC VGTCSRNICC
201: LSCYSLLLIL LILAELGAAA FIFFDNSWRD EIPSDRTGNF DTIYNFLREN WNIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEF ITPPRQIRQP
301: FINRQPAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPTQP NEEKGRCTIM
Best Arabidopsis Sequence Match ( AT1G32400.3 )
(BLAST)
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.