Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra010162.1-P | Field mustard | plasma membrane | 74.32 | 98.57 |
AT1G32400.3 | Thale cress | plasma membrane | 68.65 | 90.71 |
CDY48874 | Canola | plasma membrane | 81.62 | 87.79 |
CDX93836 | Canola | plasma membrane | 66.22 | 87.19 |
CDY01278 | Canola | plasma membrane | 65.41 | 86.12 |
KRH04302 | Soybean | endoplasmic reticulum | 52.16 | 69.68 |
KRH57584 | Soybean | plasma membrane | 45.14 | 69.01 |
KRH77234 | Soybean | golgi, plasma membrane, vacuole | 51.08 | 66.78 |
Solyc08g077220.2.1 | Tomato | golgi, plasma membrane, vacuole | 50.81 | 66.2 |
KRH28260 | Soybean | golgi, plasma membrane, vacuole | 50.27 | 65.72 |
VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 48.11 | 63.57 |
GSMUA_Achr4P20930_001 | Banana | golgi, plasma membrane, vacuole | 43.51 | 56.89 |
PGSC0003DMT400062233 | Potato | plasma membrane | 50.54 | 56.33 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 19.19 | 55.91 |
GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 42.43 | 55.48 |
KXG38876 | Sorghum | plasma membrane | 41.62 | 55.2 |
TraesCS1B01G148900.1 | Wheat | golgi, plasma membrane, vacuole | 42.43 | 55.09 |
TraesCS1D01G133700.1 | Wheat | plasma membrane | 42.43 | 55.09 |
Zm00001d030014_P011 | Maize | plasma membrane | 41.35 | 54.84 |
TraesCS1A01G137700.2 | Wheat | plasma membrane | 42.16 | 54.74 |
Os08t0282000-01 | Rice | plasma membrane | 41.62 | 54.23 |
HORVU1Hr1G034980.1 | Barley | plasma membrane | 41.62 | 54.04 |
GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 41.35 | 53.87 |
TraesCS7A01G299900.1 | Wheat | plasma membrane | 38.11 | 52.42 |
TraesCS7B01G187200.1 | Wheat | plasma membrane | 37.84 | 52.04 |
HORVU7Hr1G070700.3 | Barley | vacuole | 37.84 | 52.04 |
TraesCS7D01G294800.2 | Wheat | plasma membrane | 37.84 | 52.04 |
GSMUA_Achr1P00640_001 | Banana | plasma membrane | 38.65 | 52.0 |
EES13397 | Sorghum | plasma membrane | 37.3 | 50.37 |
Os08t0159100-01 | Rice | plasma membrane | 37.57 | 50.0 |
Zm00001d047059_P004 | Maize | golgi, plasma membrane, vacuole | 41.08 | 47.06 |
Zm00001d049526_P002 | Maize | golgi, plasma membrane, vacuole | 32.16 | 43.12 |
CDY31941 | Canola | plasma membrane | 17.57 | 30.37 |
CDY31986 | Canola | plasma membrane | 21.89 | 30.34 |
CDY05788 | Canola | plasma membrane | 17.3 | 29.91 |
CDY65849 | Canola | plasma membrane | 20.81 | 28.62 |
CDY06872 | Canola | plasma membrane | 21.08 | 28.57 |
CDY35218 | Canola | plasma membrane | 20.81 | 28.21 |
Protein Annotations
EnsemblPlants:CDY32286 | EnsemblPlantsGene:GSBRNA2T00051754001 | GO:A0A078H393 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF268 | PFAM:PF00335 | ProteinID:CDY32286 | ProteinID:CDY32286.1 |
SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDC181 | UniProt:A0A078H393 | MapMan:26.10.2.2 | : |
Description
BnaC05g28640DBnaC05g28640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H393]
Coordinates
chrLK032291:+:193238..203090
Molecular Weight (calculated)
42030.6 Da
IEP (calculated)
5.841
GRAVY (calculated)
-0.027
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCFYFTFGT FILETGTNND DIQQKYKTKE NSIPFPSVFL HLPLDDKDKI KTIYSDLCSK TQSFILREFF QRGEKKAEST IHKGAESLKN KMACRGCLEC
101: LLKLLNFLLA VAGLGMIGYG IYLFVEYQRA TDNNSLNFTG DDQSYVSFGR PMLMSVALSS NVFDNLPKAW FIYLFIGIGV ALFVISCCGC VGTCSRNICC
201: LSCYSLLLIL LILAELGAAA FIFFDNSWRD EIPSDRTGNF DTIYNFLREN WNIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEF ITPPRQIRQP
301: FINRQPAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPTQP NEEKGRCTIM
101: LLKLLNFLLA VAGLGMIGYG IYLFVEYQRA TDNNSLNFTG DDQSYVSFGR PMLMSVALSS NVFDNLPKAW FIYLFIGIGV ALFVISCCGC VGTCSRNICC
201: LSCYSLLLIL LILAELGAAA FIFFDNSWRD EIPSDRTGNF DTIYNFLREN WNIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEF ITPPRQIRQP
301: FINRQPAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPTQP NEEKGRCTIM
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.