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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93836 Canola plasma membrane 97.51 97.51
AT1G32400.3 Thale cress plasma membrane 82.21 82.5
CDY48874 Canola plasma membrane 85.41 69.77
KRH57584 Soybean plasma membrane 56.58 65.7
CDY32286 Canola plasma membrane 86.12 65.41
KRH77234 Soybean golgi, plasma membrane, vacuole 65.48 65.02
KRH28260 Soybean golgi, plasma membrane, vacuole 65.12 64.66
KRH04302 Soybean endoplasmic reticulum 63.35 64.26
Solyc08g077220.2.1 Tomato golgi, plasma membrane, vacuole 63.7 63.03
VIT_02s0012g00560.t01 Wine grape plasma membrane 60.85 61.07
KXG38876 Sorghum plasma membrane 53.38 53.76
Zm00001d030014_P011 Maize plasma membrane 53.38 53.76
GSMUA_Achr4P20930_001 Banana golgi, plasma membrane, vacuole 54.09 53.71
PGSC0003DMT400062233 Potato plasma membrane 63.35 53.61
Os08t0282000-01 Rice plasma membrane 53.38 52.82
GSMUA_AchrUn_... Banana golgi, plasma membrane, vacuole 53.02 52.65
TraesCS1D01G133700.1 Wheat plasma membrane 53.38 52.63
TraesCS1A01G137700.2 Wheat plasma membrane 53.38 52.63
TraesCS1B01G148900.1 Wheat golgi, plasma membrane, vacuole 53.02 52.28
TraesCS7A01G299900.1 Wheat plasma membrane 49.82 52.04
GSMUA_Achr11P... Banana endoplasmic reticulum, golgi 23.49 51.97
HORVU1Hr1G034980.1 Barley plasma membrane 52.67 51.93
TraesCS7D01G294800.2 Wheat plasma membrane 49.47 51.67
TraesCS7B01G187200.1 Wheat plasma membrane 49.47 51.67
HORVU7Hr1G070700.3 Barley vacuole 49.47 51.67
GSMUA_Achr4P26390_001 Banana golgi, plasma membrane, vacuole 51.6 51.06
GSMUA_Achr1P00640_001 Banana plasma membrane 49.11 50.18
Os08t0159100-01 Rice plasma membrane 48.75 49.28
EES13397 Sorghum plasma membrane 47.69 48.91
Zm00001d047059_P004 Maize golgi, plasma membrane, vacuole 52.67 45.82
Zm00001d049526_P002 Maize golgi, plasma membrane, vacuole 40.57 41.3
CDY05788 Canola plasma membrane 22.42 29.44
CDY31941 Canola plasma membrane 22.42 29.44
CDY31986 Canola plasma membrane 27.4 28.84
CDY65849 Canola plasma membrane 26.33 27.51
CDY06872 Canola plasma membrane 26.33 27.11
CDY35218 Canola plasma membrane 25.98 26.74
Protein Annotations
EnsemblPlants:CDY01278EnsemblPlantsGene:GSBRNA2T00111458001GO:A0A078EP34GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Tetraspanin/PeripherinPANTHER:PTHR19282PANTHER:PTHR19282:SF268PFAM:PF00335ProteinID:CDY01278ProteinID:CDY01278.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EEEE92MapMan:26.10.2.2::
Description
BnaC05g24540D
Coordinates
chrLK031925:+:981111..983349
Molecular Weight (calculated)
31558.4 Da
IEP (calculated)
6.709
GRAVY (calculated)
0.261
Length
281 amino acids
Sequence
(BLAST)
001: MACRGCLECL LKLLNFLLAV AGLGIIAYGI YLFVVFKRAT DHSVSFIPTN VNDQSYVSFG RPMLMAVALS SNVFDNLPKA WFVYLFIGIG VVLFVTSCCG
101: CVGTCSRSIC CLSCYSLLLI LLILAELGAA AFIFFDNSWR DQIPSDKTGN FDTIYHFLKQ NWNIVRWVAL GAVVFEALLF LLALMVRAAN TPDEYDSDDE
201: FIAPPRQIRQ PFINRQPAPV TGVPVVPTLD QRPSRSDPWS ARMREKYGLD TSEFTYNPSE SHRFQQMPTQ PNEEKGRCTI M
Best Arabidopsis Sequence Match ( AT1G32400.3 )
(BLAST)
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.