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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • golgi 3
  • plasma membrane 5
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400057803 Potato plasma membrane 87.96 87.96
VIT_00s0583g00020.t01 Wine grape plasma membrane 45.37 46.45
GSMUA_Achr10P... Banana plasma membrane 39.35 44.27
GSMUA_Achr1P02970_001 Banana plasma membrane 38.89 42.0
HORVU2Hr1G118680.7 Barley endoplasmic reticulum 33.8 41.01
Zm00001d001811_P001 Maize plasma membrane 39.81 39.81
TraesCS2A01G587000.1 Wheat plasma membrane 38.89 39.07
TraesCS2B01G596400.1 Wheat mitochondrion, plasma membrane 38.43 38.6
Solyc07g054160.2.1 Tomato plasma membrane 39.35 38.29
EES13114 Sorghum mitochondrion, plasma membrane 38.43 37.9
GSMUA_Achr5P10780_001 Banana extracellular, plasma membrane 36.11 37.86
Os04t0679900-01 Rice mitochondrion, plasma membrane 37.96 37.79
Zm00001d026634_P002 Maize mitochondrion 31.02 30.45
Solyc09g063070.2.1 Tomato plasma membrane 30.56 25.48
GSMUA_Achr11P... Banana plasma membrane 37.96 24.55
Solyc08g077220.2.1 Tomato golgi, plasma membrane, vacuole 24.07 18.31
Protein Annotations
EnsemblPlants:Solyc02g078450.2.1EnsemblPlantsGene:Solyc02g078450.2GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Tetraspanin
InterPro:Tetraspanin/PeripherinPANTHER:PTHR19282PANTHER:PTHR19282:SF158PFAM:PF00335PRINTS:PR00259SEG:seg
TMHMM:TMhelixUniParc:UPI00027682AEUniProt:K4B969MapMan:35.1::
Description
No Description!
Coordinates
chr2:+:43120160..43121845
Molecular Weight (calculated)
24265.4 Da
IEP (calculated)
4.776
GRAVY (calculated)
0.295
Length
216 amino acids
Sequence
(BLAST)
001: MVKLVKSYLR LSLKITNITI GFMGIAMLIY GVWMIRVWQR DAANSPSSPD YAQFPWFIHA FLGVGTALCA ITFLGHVAAS TANSYCLSFY MFFIFVLLLA
101: EIAITADVFL NSDWEKDLPE DPSGRFDDFK DFVDSNSDVC QWITLLCVLT QGCCILLATI LRTLGQVKEN SHEYEGEYAE PSAPLLRPPQ LPPNPLYPYV
201: IGEPVHIEPH SAYKNV
Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.