Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65849 | Canola | plasma membrane | 76.67 | 76.95 |
| CDY31986 | Canola | plasma membrane | 73.7 | 74.53 |
| AT4G28770.2 | Thale cress | plasma membrane | 71.48 | 59.38 |
| VIT_07s0005g04950.t01 | Wine grape | plasma membrane | 52.59 | 51.82 |
| KRH32282 | Soybean | plasma membrane | 45.93 | 50.82 |
| GSMUA_Achr7P06690_001 | Banana | plasma membrane | 30.37 | 50.62 |
| KRH19680 | Soybean | plasma membrane | 45.93 | 50.61 |
| PGSC0003DMT400048750 | Potato | plasma membrane | 43.7 | 45.56 |
| Solyc09g063070.2.1 | Tomato | plasma membrane | 42.59 | 44.4 |
| GSMUA_Achr2P17910_001 | Banana | plasma membrane | 22.96 | 42.76 |
| Zm00001d028780_P001 | Maize | extracellular, plasma membrane | 30.74 | 41.09 |
| Os06t0731400-02 | Rice | golgi, plasma membrane | 34.07 | 38.02 |
| TraesCS3D01G457500.3 | Wheat | golgi, plasma membrane | 33.7 | 36.99 |
| EER89022 | Sorghum | extracellular, plasma membrane | 34.07 | 36.65 |
| TraesCS3A01G463600.1 | Wheat | extracellular, mitochondrion, plasma membrane, plastid | 32.96 | 36.18 |
| TraesCS3B01G506800.1 | Wheat | golgi, mitochondrion, plasma membrane, plastid | 32.59 | 35.77 |
| TraesCS7B01G360400.1 | Wheat | plasma membrane | 32.22 | 35.08 |
| TraesCS7B01G360600.1 | Wheat | plasma membrane | 32.22 | 35.08 |
| TraesCS7D01G447700.1 | Wheat | plasma membrane | 31.85 | 33.99 |
| AT2G20740.1 | Thale cress | plasma membrane | 27.78 | 33.94 |
| HORVU7Hr1G105880.1 | Barley | plastid | 33.33 | 30.0 |
| AT1G32400.3 | Thale cress | plasma membrane | 29.63 | 28.57 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816542 | UniProt:A0A178VQV9 | ProteinID:AAD21765.2 | ProteinID:AEC06983.1 | ArrayExpress:AT2G20230 |
| EnsemblPlantsGene:AT2G20230 | RefSeq:AT2G20230 | TAIR:AT2G20230 | RefSeq:AT2G20230-TAIR-G | EnsemblPlants:AT2G20230.1 | TAIR:AT2G20230.1 |
| EMBL:AY054570 | EMBL:AY064662 | EMBL:AY088475 | Unigene:At.13955 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_565468.1 | ProteinID:OAP08810.1 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00259 | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF227 | UniProt:Q93XY5 | TMHMM:TMhelix |
| InterPro:Tetraspanin | UniParc:UPI00000A8582 | SEG:seg | : | : | : |
Description
TOM2AH2Tetraspanin-18 [Source:UniProtKB/Swiss-Prot;Acc:Q93XY5]
Coordinates
chr2:+:8725541..8727742
Molecular Weight (calculated)
29723.0 Da
IEP (calculated)
4.930
GRAVY (calculated)
0.227
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRNCCHVSF ASTLKILNFV QAFIGVSIII YSIWMLHEYS RHLPVDPPPS ASSSSGTEIA TSVSEPLKNP IDFVASIILG SNGGDHGFNL RSLDLPAPWF
101: IYSFMAVGIL VCIVTFIGFI AAEAINGCCL CFYSILKTLL ILLEAALVAY IAIDRHWEKD LPYDPTGELS SLRAFIEENI DICKWVGIAV VAVQLLSLLL
201: AMVLRAMVST PKPELDEEED DENPRSRTWD PLLGPQGNQA PAGSSKIENW SSRIREKYGL NQSPPVNPKG
101: IYSFMAVGIL VCIVTFIGFI AAEAINGCCL CFYSILKTLL ILLEAALVAY IAIDRHWEKD LPYDPTGELS SLRAFIEENI DICKWVGIAV VAVQLLSLLL
201: AMVLRAMVST PKPELDEEED DENPRSRTWD PLLGPQGNQA PAGSSKIENW SSRIREKYGL NQSPPVNPKG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.