Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 6
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57928 | Canola | extracellular, golgi, vacuole | 99.22 | 99.22 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 95.35 | 95.35 |
| CDY31053 | Canola | extracellular | 94.57 | 94.57 |
| CDY20664 | Canola | extracellular | 93.02 | 92.31 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 98.45 | 77.44 |
| KRH62124 | Soybean | extracellular, golgi | 76.74 | 76.74 |
| KRH52827 | Soybean | extracellular | 76.74 | 76.74 |
| Os12t0633200-01 | Rice | extracellular, golgi | 81.4 | 75.54 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 75.97 | 74.81 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 75.19 | 74.62 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 71.32 | 70.77 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 70.54 | 70.54 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 77.52 | 70.42 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 69.77 | 69.77 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 76.74 | 69.72 |
| OQU79719 | Sorghum | extracellular, golgi | 75.97 | 69.01 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 75.19 | 68.31 |
| TraesCS2B01G376400.1 | Wheat | golgi | 74.42 | 67.61 |
| EES19099 | Sorghum | golgi, plasma membrane | 74.42 | 66.67 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 55.04 | 65.74 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 68.99 | 65.44 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 75.97 | 65.33 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 68.99 | 63.12 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 20.16 | 59.09 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 75.19 | 58.79 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 54.26 | 50.0 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 54.26 | 50.0 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 52.71 | 49.28 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 51.94 | 47.86 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 51.94 | 45.58 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 51.16 | 45.21 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 50.39 | 44.22 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 43.41 | 34.15 |
| Zm00001d040493_P001 | Maize | plastid | 47.29 | 33.7 |
Protein Annotations
| EnsemblPlants:CDY63742 | EnsemblPlantsGene:GSBRNA2T00039594001 | GO:A0A078JCF4 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | ProteinID:CDY63742 | ProteinID:CDY63742.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EC8801 | UniProt:A0A078JCF4 | MapMan:35.1 | : | : |
Description
BnaC05g07790DBnaC05g07790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCF4]
Coordinates
chrLK034345:-:18474..20869
Molecular Weight (calculated)
14844.2 Da
IEP (calculated)
8.076
GRAVY (calculated)
0.656
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNPENKPL YLATFLSFIY ALGHFLTEYL FYHTMTVANL
101: STVAFFAGTS IVWMLWEWSS LEQPHSKLS
101: STVAFFAGTS IVWMLWEWSS LEQPHSKLS
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [extracellular,golgi]
SUBAcon: [extracellular,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.