Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P | |
| Bra026434.1-P | |
| Bra027174.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10030.1 | Bra027174.1-P | AT3G16310.1 | 21798944 |
| AT1G10030.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT1G10030.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
| AT1G10030.1 | Bra026434.1-P | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57928 | Canola | extracellular, golgi, vacuole | 78.05 | 99.22 |
| CDY63742 | Canola | extracellular, golgi | 77.44 | 98.45 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 75.0 | 95.35 |
| Bra018466.1-P | Field mustard | extracellular | 74.39 | 94.57 |
| KRH62124 | Soybean | extracellular, golgi | 60.37 | 76.74 |
| KRH52827 | Soybean | extracellular | 60.37 | 76.74 |
| Os12t0633200-01 | Rice | extracellular, golgi | 64.02 | 75.54 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 59.76 | 74.81 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 59.15 | 74.62 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 56.1 | 70.77 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 55.49 | 70.54 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 60.98 | 70.42 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 54.88 | 69.77 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 60.37 | 69.72 |
| OQU79719 | Sorghum | extracellular, golgi | 59.76 | 69.01 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 59.15 | 68.31 |
| TraesCS2B01G376400.1 | Wheat | golgi | 59.15 | 68.31 |
| EES19099 | Sorghum | golgi, plasma membrane | 58.54 | 66.67 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 59.76 | 65.33 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 42.68 | 64.81 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 53.05 | 63.97 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 54.27 | 63.12 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 15.85 | 59.09 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 58.54 | 58.18 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 43.29 | 50.71 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 43.29 | 50.71 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 42.07 | 50.0 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 41.46 | 48.57 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 42.07 | 46.94 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 41.46 | 46.58 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 40.85 | 45.58 |
| Zm00001d040493_P001 | Maize | plastid | 37.8 | 34.25 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 34.15 | 34.15 |
Protein Annotations
| EnsemblPlants:Bra019965.1 | EnsemblPlants:Bra019965.1-P | EnsemblPlantsGene:Bra019965 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Erg28 | PANTHER:PTHR15451 | PFAM:PF03694 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253E993 |
| UniProt:M4DTX2 | MapMan:35.1 | : | : | : | : |
Description
AT1G10030 (E=4e-038) ERG28 | ERG28 (Arabidopsis homolog of yeast ergosterol28)
Coordinates
chrA06:+:3474683..3476732
Molecular Weight (calculated)
18434.5 Da
IEP (calculated)
7.500
GRAVY (calculated)
0.666
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTSS VLSPSLPPSL LISISIPMSF DPSLSYLVTS GYGVSEVHGR TFGVWTLLTC TLCFLCAFNP
101: ENKPLYLATF LSFIYALGHF LTEYLFYHTM TVANLSTVAF FAGTSIVWML WEWNSLEQPH SKLS
101: ENKPLYLATF LSFIYALGHF LTEYLFYHTM TVANLSTVAF FAGTSIVWML WEWNSLEQPH SKLS
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.