Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 95.77 | 95.77 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 95.77 | 95.77 |
| OQU79719 | Sorghum | extracellular, golgi | 84.51 | 84.51 |
| Os12t0633200-01 | Rice | extracellular, golgi | 82.39 | 84.17 |
| EES19099 | Sorghum | golgi, plasma membrane | 81.69 | 80.56 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 80.28 | 80.28 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 83.8 | 79.33 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 71.13 | 77.1 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 69.72 | 76.74 |
| Bra018466.1-P | Field mustard | extracellular | 68.31 | 75.19 |
| KRH62124 | Soybean | extracellular, golgi | 68.31 | 75.19 |
| KRH52827 | Soybean | extracellular | 68.31 | 75.19 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 68.31 | 75.19 |
| CDY63742 | Canola | extracellular, golgi | 67.61 | 74.42 |
| CDY31053 | Canola | extracellular | 67.61 | 74.42 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 67.61 | 73.85 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 66.9 | 73.08 |
| CDY20664 | Canola | extracellular | 66.2 | 72.31 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 64.79 | 71.32 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 64.08 | 70.54 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 69.01 | 69.5 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 52.11 | 68.52 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 79.58 | 68.48 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 65.49 | 68.38 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 68.31 | 59.15 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 18.31 | 59.09 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 50.0 | 50.71 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G376400.1 | EnsemblPlantsGene:TraesCS2B01G376400 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Erg28 |
| PANTHER:PTHR15451 | PFAM:PF03694 | SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:+:539336153..539338322
Molecular Weight (calculated)
15447.9 Da
IEP (calculated)
9.265
GRAVY (calculated)
0.533
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKGGRKSV PALGWWLMLV GSLRLASVWF GFFNIWALRA AVFSXXXXTE IHGRTFGVWT LLTCTLCFLC AFNLENKPLY IATFLSFIYA LGHFLTEYLI
101: YHTMAAANLG TVGFFAGTSI VWMLLQWNSH GDSRGSHAVK QS
101: YHTMAAANLG TVGFFAGTSI VWMLLQWNSH GDSRGSHAVK QS
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.