Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 | |
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10030.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT1G10030.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT1G10030.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62124 | Soybean | extracellular, golgi | 79.39 | 80.62 |
| KRH52827 | Soybean | extracellular | 79.39 | 80.62 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 78.63 | 79.84 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 78.63 | 79.84 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 78.63 | 79.84 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 78.63 | 79.23 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 77.1 | 77.69 |
| Bra018466.1-P | Field mustard | extracellular | 75.57 | 76.74 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 75.57 | 76.74 |
| CDY63742 | Canola | extracellular, golgi | 74.81 | 75.97 |
| CDY31053 | Canola | extracellular | 74.81 | 75.97 |
| Os12t0633200-01 | Rice | extracellular, golgi | 78.63 | 74.1 |
| CDY20664 | Canola | extracellular | 72.52 | 73.08 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 77.86 | 71.83 |
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 77.86 | 71.83 |
| OQU79719 | Sorghum | extracellular, golgi | 77.1 | 71.13 |
| TraesCS2B01G376400.1 | Wheat | golgi | 77.1 | 71.13 |
| EES19099 | Sorghum | golgi, plasma membrane | 77.86 | 70.83 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 76.34 | 70.42 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 77.1 | 67.33 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 64.89 | 62.5 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 51.15 | 62.04 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 66.41 | 61.7 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 74.81 | 59.76 |
| HORVU2Hr1G086900.2 | Barley | golgi, plasma membrane | 72.52 | 57.58 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 19.08 | 56.82 |
| TraesCS6A01G215700.1 | Wheat | extracellular, golgi, plasma membrane | 53.44 | 50.0 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 52.67 | 49.29 |
| TraesCS6D01G198000.1 | Wheat | plasma membrane | 51.15 | 48.55 |
| TraesCS6B01G245300.1 | Wheat | extracellular, golgi, plasma membrane | 51.15 | 47.86 |
| Zm00001d040481_P001 | Maize | extracellular, mitochondrion | 51.91 | 46.58 |
| Zm00001d040501_P001 | Maize | extracellular, golgi, plastid | 51.91 | 46.26 |
| Zm00001d007729_P001 | Maize | extracellular, golgi, vacuole | 51.15 | 45.58 |
| Zm00001d040493_P001 | Maize | plastid | 47.33 | 34.25 |
| Zm00001d023774_P002 | Maize | extracellular, golgi, plasma membrane | 42.75 | 34.15 |
Protein Annotations
| EntrezGene:100250651 | wikigene:100250651 | MapMan:35.1 | EMBL:AM424396 | ProteinID:CAN62369 | ProteinID:CAN62369.1 |
| ProteinID:CBI19338 | ProteinID:CBI19338.3 | UniProt:E0CNW0 | InterPro:Erg28 | EMBL:FN595227 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 | GO:GO:0006696 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030674 | EntrezGene:LOC100250651 |
| wikigene:LOC100250651 | PFAM:PF03694 | PANTHER:PTHR15451 | TIGR:TC53034 | TMHMM:TMhelix | UniParc:UPI00015C75AD |
| ArrayExpress:VIT_18s0001g08330 | EnsemblPlantsGene:VIT_18s0001g08330 | EnsemblPlants:VIT_18s0001g08330.t01 | unigene:Vvi.5004 | RefSeq:XP_002285532 | RefSeq:XP_002285532.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:6831294..6834674
Molecular Weight (calculated)
15149.8 Da
IEP (calculated)
9.276
GRAVY (calculated)
0.628
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MRALGWWLML VGSLRLASVW FGFFDIWALR LAVFSKSPMT EVHGRTFGVW TLLTCTLCFL CAFNLDNKQL YLATFLSFIY ALGHFLTEYL IYQTMAIANL
101: TTVSIFAGTS IVWMLLQWNA HQRQQVNLKH S
101: TTVSIFAGTS IVWMLLQWNA HQRQQVNLKH S
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.