Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G357200.1 | Wheat | extracellular, golgi | 72.12 | 83.8 |
| TraesCS2D01G356000.1 | Wheat | extracellular, golgi, plasma membrane | 71.52 | 83.1 |
| TraesCS2B01G376400.1 | Wheat | golgi | 68.48 | 79.58 |
| OQU79719 | Sorghum | extracellular, golgi | 67.27 | 78.17 |
| AT1G10030.1 | Thale cress | extracellular, golgi | 60.0 | 76.74 |
| Os12t0633200-01 | Rice | extracellular, golgi | 63.64 | 75.54 |
| CDY20664 | Canola | extracellular | 59.39 | 75.38 |
| Bra018466.1-P | Field mustard | extracellular | 58.79 | 75.19 |
| CDY57928 | Canola | extracellular, golgi, vacuole | 58.79 | 75.19 |
| CDY63742 | Canola | extracellular, golgi | 58.79 | 75.19 |
| EES19099 | Sorghum | golgi, plasma membrane | 65.45 | 75.0 |
| CDY31053 | Canola | extracellular | 58.18 | 74.42 |
| Zm00001d031200_P002 | Maize | golgi, plasma membrane | 67.27 | 74.0 |
| Zm00001d037522_P001 | Maize | extracellular, golgi | 63.64 | 73.94 |
| VIT_18s0001g08330.t01 | Wine grape | extracellular | 57.58 | 72.52 |
| HORVU1Hr1G028210.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 47.27 | 72.22 |
| HORVU4Hr1G011970.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plastid | 59.39 | 72.06 |
| KRH62124 | Soybean | extracellular, golgi | 55.76 | 71.32 |
| GSMUA_Achr6P30120_001 | Banana | extracellular | 55.76 | 70.77 |
| KRH52827 | Soybean | extracellular | 55.15 | 70.54 |
| GSMUA_Achr7P08060_001 | Banana | extracellular, golgi, plasma membrane | 54.55 | 69.23 |
| HORVU6Hr1G068400.2 | Barley | endoplasmic reticulum, extracellular | 58.79 | 68.79 |
| PGSC0003DMT400012718 | Potato | extracellular, golgi | 53.33 | 68.22 |
| Solyc04g077150.2.1 | Tomato | extracellular, golgi | 52.12 | 66.67 |
| HORVU6Hr1G056080.4 | Barley | endoplasmic reticulum, vacuole | 15.76 | 59.09 |
| Bra019965.1-P | Field mustard | golgi, plasma membrane | 58.18 | 58.54 |
| HORVU0Hr1G015930.1 | Barley | extracellular | 44.24 | 52.14 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G086900.2 | EnsemblPlantsGene:HORVU2Hr1G086900 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Erg28 |
| PANTHER:PTHR15451 | PFAM:PF03694 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B488BEF | UniProt:A0A287ISQ8 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:625292506..625294770
Molecular Weight (calculated)
18215.2 Da
IEP (calculated)
7.269
GRAVY (calculated)
0.616
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKGGRKGV PALGWWLMLV GSLRLASVWF GFFNIWALRV AVFSQTEMTE IHGRTFGVWT LLTCTLCFLC AFNLENKPLY IATFLSFIYA LGHFLTEYLI
101: YHTMAAANLS TVGFFAGNIN CMDAASVELS WGFAWFPCCQ AVVSGICAPG EGYSKLEGAS RTFSL
101: YHTMAAANLS TVGFFAGNIN CMDAASVELS WGFAWFPCCQ AVVSGICAPG EGYSKLEGAS RTFSL
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
Arabidopsis Description
ERG28Ergosterol biosynthetic protein 28 [Source:UniProtKB/Swiss-Prot;Acc:O80594]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.