Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G342600.1 | Wheat | plastid | 89.43 | 87.06 |
| TraesCS1A01G340600.1 | Wheat | plastid | 77.95 | 76.33 |
| EES19830 | Sorghum | mitochondrion | 72.21 | 73.31 |
| Os05t0520100-00 | Rice | mitochondrion | 70.39 | 70.39 |
| Zm00001d038803_P001 | Maize | mitochondrion | 68.28 | 70.19 |
| Zm00001d010783_P001 | Maize | plastid | 69.18 | 66.19 |
| HORVU3Hr1G071060.1 | Barley | plastid | 47.43 | 50.32 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 43.5 | 40.22 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 36.56 | 38.17 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 32.63 | 37.89 |
| AT3G16310.1 | Thale cress | plastid | 34.44 | 34.65 |
| Bra027174.1-P | Field mustard | plastid | 34.44 | 34.13 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 32.02 | 34.08 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 34.44 | 34.03 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 33.84 | 33.84 |
| KRH23409 | Soybean | mitochondrion | 33.53 | 33.53 |
| CDY30157 | Canola | plastid | 34.44 | 26.89 |
| Solyc03g120880.2.1 | Tomato | nucleus | 34.44 | 22.71 |
| CDX97739 | Canola | plastid | 34.44 | 17.09 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | UniProt:A0A287GAK5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 |
| GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0031965 |
| GO:GO:0051028 | EnsemblPlantsGene:HORVU1Hr1G076010 | EnsemblPlants:HORVU1Hr1G076010.1 | InterPro:IPR007846 | InterPro:IPR012677 | InterPro:Nucleoporin_NUP53 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 | PANTHER:PTHR21527:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | UniParc:UPI000B4808F0 | SEG:seg | : |
Description
Nuclear pore complex protein NUP35 [Source:UniProtKB/TrEMBL;Acc:A0A287GAK5]
Coordinates
chrchr1H:+:513068974..513080154
Molecular Weight (calculated)
34807.1 Da
IEP (calculated)
10.213
GRAVY (calculated)
-0.366
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASPSSSRS PAASRRGGRA ARQSPFFRDL ASPIPSHRGG SRFASAAAAA PSPATLPPPP LFTLDDRFAA ADFSPDPTAS DLLPVASSPS PRAGSGSRSP
101: SWDRSRGKAS AHGSPMDGVV EPPRKELLAL PPPSSPCTPP PTATAAAAEA PSPVTPATET ARTEPATEGK VDGEEWVTVF GFSLRDTNLV LREFEKCGVI
201: LRHHSGPREG NWIHILYQHS YDARKALQKN GIQLCSGVII GVKHIDPMHQ QQLDDRFTGI NQGGFMVSLP SKSLVLKSST GASNQLGALP RPYDPKSSTN
301: VIREGGRRTT GSVAAPAKSI VTNVMDLIFG I
101: SWDRSRGKAS AHGSPMDGVV EPPRKELLAL PPPSSPCTPP PTATAAAAEA PSPVTPATET ARTEPATEGK VDGEEWVTVF GFSLRDTNLV LREFEKCGVI
201: LRHHSGPREG NWIHILYQHS YDARKALQKN GIQLCSGVII GVKHIDPMHQ QQLDDRFTGI NQGGFMVSLP SKSLVLKSST GASNQLGALP RPYDPKSSTN
301: VIREGGRRTT GSVAAPAKSI VTNVMDLIFG I
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.