Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 77.19 | 94.52 |
| TraesCSU01G007200.1 | Wheat | nucleus | 92.75 | 93.55 |
| Os10t0565000-01 | Rice | cytosol, plastid | 89.98 | 90.36 |
| EER94469 | Sorghum | plastid | 86.57 | 89.23 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 84.65 | 87.44 |
| Zm00001d029979_P001 | Maize | plastid | 84.44 | 87.22 |
| Bra040112.1-P | Field mustard | cytosol | 36.89 | 73.93 |
| KRH66442 | Soybean | cytosol | 20.9 | 73.68 |
| KRH48871 | Soybean | cytosol | 20.68 | 72.93 |
| KRH54848 | Soybean | endoplasmic reticulum | 22.39 | 71.43 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 68.44 | 67.15 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 53.73 | 58.47 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 61.62 | 58.38 |
| KRH46546 | Soybean | cytosol | 55.22 | 57.3 |
| KRH75587 | Soybean | cytosol | 55.22 | 57.17 |
| PGSC0003DMT400034161 | Potato | cytosol | 58.0 | 56.43 |
| KRH04250 | Soybean | cytosol | 51.6 | 55.89 |
| Solyc10g061960.1.1 | Tomato | cytosol | 57.36 | 55.01 |
| VIT_15s0021g01010.t01 | Wine grape | cytosol | 57.78 | 54.86 |
| PGSC0003DMT400004624 | Potato | plastid | 49.25 | 53.35 |
| CDX76579 | Canola | cytosol, endoplasmic reticulum, golgi | 49.47 | 52.02 |
| Bra021069.1-P | Field mustard | cytosol, golgi, plasma membrane | 49.68 | 51.89 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 59.49 | 49.29 |
| CDY35600 | Canola | cytosol | 50.53 | 47.78 |
| Solyc08g077730.2.1 | Tomato | cytosol | 52.45 | 47.04 |
| CDY43465 | Canola | cytosol | 49.47 | 46.96 |
| CDY67767 | Canola | cytosol | 50.32 | 46.92 |
| AT2G35170.1 | Thale cress | cytosol | 47.55 | 46.07 |
| AT4G17080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 50.32 | 46.0 |
| HORVU5Hr1G067890.4 | Barley | cytosol | 33.69 | 38.07 |
| HORVU7Hr1G122550.2 | Barley | cytosol | 8.96 | 12.43 |
| HORVU4Hr1G006780.1 | Barley | cytosol | 16.84 | 10.9 |
| HORVU4Hr1G046320.4 | Barley | cytosol | 17.06 | 10.62 |
| HORVU6Hr1G093060.2 | Barley | nucleus, plastid | 17.48 | 10.07 |
| HORVU4Hr1G025960.1 | Barley | mitochondrion, plastid | 17.06 | 9.88 |
| HORVU2Hr1G107760.2 | Barley | cytosol | 16.84 | 9.74 |
| HORVU4Hr1G006200.5 | Barley | cytosol | 16.2 | 9.68 |
| HORVU5Hr1G042990.11 | Barley | cytosol | 16.2 | 9.61 |
| HORVU7Hr1G122690.9 | Barley | plastid | 17.27 | 9.52 |
| HORVU4Hr1G048470.2 | Barley | cytosol, nucleus, plastid | 5.54 | 5.19 |
| HORVU4Hr1G061610.2 | Barley | mitochondrion | 5.76 | 5.1 |
| HORVU2Hr1G022850.9 | Barley | cytosol | 4.69 | 4.09 |
Protein Annotations
| EMBL:AK354742 | EMBL:AK376977 | EnsemblPlants:HORVU1Hr1G055220.1 | EnsemblPlantsGene:HORVU1Hr1G055220 | Gene3D:2.20.110.10 | InterPro:MORN |
| PANTHER:PTHR23084 | PANTHER:PTHR23084:SF203 | PFAM:PF02493 | SEG:seg | SMART:SM00698 | SUPFAM:SSF82185 |
| UniParc:UPI0002004E7D | UniProt:F2CSZ0 | MapMan:35.1 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CSZ0]
Coordinates
chrchr1H:-:405052701..405056928
Molecular Weight (calculated)
51156.4 Da
IEP (calculated)
10.110
GRAVY (calculated)
-0.430
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MHHHHLPVAA AAAPDAAAGP EPPPPSDPNH PPPPHPSSLR IHIPSSPHHA LPSTPHKRPV SMNSSSSATP TRPSPLPSPF TPPRRRKLAA SSVPPAPAAA
101: AAAAAAARHL LRCLHLRLRI LLLLSLPTLY FLSPSPAILP RSLLADFLSA AAFSCALLLL LCLSLPRLPF PLPFHLPLRR PRRSPILWSI GSSPSASASA
201: PTTGHFVQVY SNGDVYEGQF NRGRCTGSGV YYYYMSGRYE GDWIDGKYDG YGVETWARGS RYRGQYRQGL RHGHGVYRFY TGDVYSGEWS NGQSHGYGVH
301: TCEDGSRYIG EFKRGVKHGL GHYHFRNGDT YAGEYFADRM HGFGVYSFAN GHRYEGAWHE GRRQGLGMYT FRNGETQAGH WQNGVLDTLS TQNIVPGSAI
401: AVNHSKVLNA VQEARRATEK AYDVPRVDDK VNRAVAAANK AANAARVSAV KAAQKRIPNN NDDLPLSIV
101: AAAAAAARHL LRCLHLRLRI LLLLSLPTLY FLSPSPAILP RSLLADFLSA AAFSCALLLL LCLSLPRLPF PLPFHLPLRR PRRSPILWSI GSSPSASASA
201: PTTGHFVQVY SNGDVYEGQF NRGRCTGSGV YYYYMSGRYE GDWIDGKYDG YGVETWARGS RYRGQYRQGL RHGHGVYRFY TGDVYSGEWS NGQSHGYGVH
301: TCEDGSRYIG EFKRGVKHGL GHYHFRNGDT YAGEYFADRM HGFGVYSFAN GHRYEGAWHE GRRQGLGMYT FRNGETQAGH WQNGVLDTLS TQNIVPGSAI
401: AVNHSKVLNA VQEARRATEK AYDVPRVDDK VNRAVAAANK AANAARVSAV KAAQKRIPNN NDDLPLSIV
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.