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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:
  • nucleus 1
  • golgi 2
  • mitochondrion 1
  • plastid 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:extracellular, mitochondrion, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17080.1 Bra000214.1-P AT2G41090.1 17360592
AT4G17080.1 Bra000214.1-P AT2G41100.1 17360592
AT4G17080.1 Bra018296.1-P AT3G51920.1 17360592
AT4G17080.1 Bra033467.1-P AT3G51920.1 17360592
AT4G17080.1 Bra039723.1-P AT4G14640.1 17360592
AT4G17080.1 Bra002368.1-P AT5G21274.1 17360592
AT4G17080.1 Bra006595.1-P AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76579 Canola cytosol, endoplasmic reticulum, golgi 98.66 99.33
Bra040112.1-P Field mustard cytosol 49.67 95.3
CDY43465 Canola cytosol 94.65 86.03
AT4G17080.1 Thale cress cytosol, peroxisome, plasma membrane 88.86 77.78
HORVU4Hr1G082070.1 Barley endoplasmic reticulum 50.78 59.53
PGSC0003DMT400004624 Potato plastid 53.67 55.66
KRH04250 Soybean cytosol 51.22 53.12
Zm00001d029979_P001 Maize plastid 53.01 52.42
Zm00001d000053_P001 Maize cytosol, plastid 52.78 52.2
EER94469 Sorghum plastid 52.78 52.09
Os10t0565000-01 Rice cytosol, plastid 53.67 51.61
GSMUA_Achr2P10390_001 Banana cytosol 54.34 51.05
GSMUA_Achr4P21670_001 Banana cytosol 55.9 50.71
TraesCSU01G007200.1 Wheat nucleus 51.89 50.11
HORVU1Hr1G055220.1 Barley cytosol 51.89 49.68
GSMUA_Achr4P26370_001 Banana plastid 46.99 48.96
Solyc08g077730.2.1 Tomato cytosol 55.68 47.8
VIT_02s0012g00090.t01 Wine grape mitochondrion 59.91 47.53
Bra031352.1-P Field mustard golgi, mitochondrion, peroxisome, plasma membrane 39.87 41.92
Bra016399.1-P Field mustard cytosol, golgi, mitochondrion, nucleus 39.2 41.51
Bra012299.1-P Field mustard mitochondrion 38.31 41.05
Bra008321.1-P Field mustard mitochondrion 37.19 40.24
Bra016396.1-P Field mustard cytosol 18.49 11.31
Bra019892.1-P Field mustard cytosol 18.04 10.67
Bra027121.1-P Field mustard cytosol 18.26 10.53
Bra040043.1-P Field mustard cytosol 16.7 10.52
Bra000219.1-P Field mustard cytosol 18.04 10.48
Bra001278.1-P Field mustard cytosol 16.7 10.43
Bra008331.1-P Field mustard cytosol 16.93 10.26
Bra004606.1-P Field mustard cytosol 17.59 10.22
Bra029805.1-P Field mustard nucleus 18.49 10.16
Bra014660.1-P Field mustard cytosol 17.37 10.09
Bra003258.1-P Field mustard cytosol 16.93 10.04
Bra007288.1-P Field mustard mitochondrion 16.7 9.79
Bra031742.1-P Field mustard cytosol 11.58 7.5
Bra007756.1-P Field mustard cytosol 15.81 5.66
Bra037379.1-P Field mustard cytosol 7.35 5.23
Bra033262.1-P Field mustard cytosol 3.12 3.29
Protein Annotations
EnsemblPlants:Bra021069.1EnsemblPlants:Bra021069.1-PEnsemblPlantsGene:Bra021069Gene3D:2.20.110.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:MORNPANTHER:PTHR23084PANTHER:PTHR23084:SF203PFAM:PF02493SEG:seg
SMART:SM00698SUPFAM:SSF82185TMHMM:TMhelixUniParc:UPI0002546EDDUniProt:M4DX23MapMan:35.1
Description
AT4G17080 (E=2e-143) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT2G35170.1); Has 18005 Blast hits to 5199 proteins in 343 species: Archae - 0; Bacteria - 1726; Metazoa - 3046; Fungi - 93; Plants - 653; Viruses - 0; Other Eukaryotes - 12487 (source: NCBI BLink).
Coordinates
chrA08:+:10062477..10064597
Molecular Weight (calculated)
50083.3 Da
IEP (calculated)
9.905
GRAVY (calculated)
-0.331
Length
449 amino acids
Sequence
(BLAST)
001: MYVNASVAER RFIGKEAAAC LPSDPKPKIK HHLPQSHLTV EIADSSSPPQ SSHPFDLRLG SILSFVSSSL PSIPSATNQK LLRQVIRVRL ICFHLRFLLL
101: LSVPPLYVFF LLISFRFFLV FVFSILAFSF FLSISLKLAL PRLPSIRLII ARLLSLKLRS SSSSSSSQVV WSIGSKPVTE KKTDSGSWVH KYSSGDVYEG
201: EFHKGKCSGS GVYYYSMKGK YEGDWVDGKY DGYGVETWAK GSRYRGQYRQ GMRHGAGIYR FYTGDVYAGE WSNGQSHGCG VYTSEDGSRF VGEFKWGVKH
301: GLGHYHFRNG DTYAGEYFAD RMHGFGVYQF GNGHRYEGAW HEGRRQGLGM YTFRNGETQA GHWDDGVLSC PTEQSTRPGS SFSISHSKVL DTVQQARKAA
401: EKAHEVVKVE ERVNRAVMVA NRAANSARVA ATKAVQTKTY YSSGGDDPL
Best Arabidopsis Sequence Match ( AT4G17080.1 )
(BLAST)
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.