CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17080.1	EES01631	AT2G41090.1	17360592
AT4G17080.1	EES09201	AT2G41090.1	17360592
AT4G17080.1	EES16322	AT2G41090.1	17360592
AT4G17080.1	OQU78227	AT2G41090.1	17360592
AT4G17080.1	EES01631	AT2G41100.1	17360592
AT4G17080.1	EES09201	AT2G41100.1	17360592
AT4G17080.1	EES16322	AT2G41100.1	17360592
AT4G17080.1	OQU78227	AT2G41100.1	17360592
AT4G17080.1	KXG37587	AT4G14640.1	17360592
AT4G17080.1	KXG37588	AT4G14640.1	17360592
AT4G17080.1	EES01631	AT5G21274.1	17360592
AT4G17080.1	EES09201	AT5G21274.1	17360592
AT4G17080.1	EES16322	AT5G21274.1	17360592
AT4G17080.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029979_P001	Maize	plastid	97.36	97.58
Zm00001d000053_P001	Maize	cytosol, plastid	97.14	97.36
HORVU4Hr1G082070.1	Barley	endoplasmic reticulum	74.51	88.51
Os10t0565000-01	Rice	cytosol, plastid	90.55	88.22
HORVU1Hr1G055220.1	Barley	cytosol	89.23	86.57
TraesCSU01G007200.1	Wheat	nucleus	86.37	84.52
Bra040112.1-P	Field mustard	cytosol	38.68	75.21
KRH66442	Soybean	cytosol	21.32	72.93
KRH54848	Soybean	endoplasmic reticulum	23.52	72.79
KRH48871	Soybean	cytosol	20.66	70.68
GSMUA_Achr2P10390_001	Banana	cytosol	69.23	65.9
KRH46546	Soybean	cytosol	58.9	59.29
KRH75587	Soybean	cytosol	58.9	59.16
GSMUA_Achr4P26370_001	Banana	plastid	55.82	58.93
GSMUA_Achr4P21670_001	Banana	cytosol	63.74	58.59
PGSC0003DMT400034161	Potato	cytosol	61.1	57.68
KRH04250	Soybean	cytosol	53.63	56.35
Solyc10g061960.1.1	Tomato	cytosol	60.44	56.24
VIT_15s0021g01010.t01	Wine grape	cytosol	60.88	56.07
PGSC0003DMT400004624	Potato	plastid	50.55	53.12
CDX76579	Canola	cytosol, endoplasmic reticulum, golgi	51.87	52.91
Bra021069.1-P	Field mustard	cytosol, golgi, plasma membrane	52.09	52.78
CDY35600	Canola	cytosol	53.41	48.99
VIT_02s0012g00090.t01	Wine grape	mitochondrion	60.88	48.94
CDY67767	Canola	cytosol	53.19	48.11
CDY43465	Canola	cytosol	52.09	47.98
Solyc08g077730.2.1	Tomato	cytosol	54.29	47.23
AT4G17080.1	Thale cress	cytosol, peroxisome, plasma membrane	52.53	46.59
AT2G35170.1	Thale cress	cytosol	48.57	45.66
OQU80624	Sorghum	cytosol, golgi, plasma membrane	41.32	45.08
KXG35752	Sorghum	plastid	41.1	44.31
OQU92571	Sorghum	cytosol	18.46	11.2
EER99841	Sorghum	cytosol	19.12	11.13
EER91019	Sorghum	cytosol	16.92	10.62
OQU82859	Sorghum	plastid	17.8	10.33
KXG38228	Sorghum	nucleus	18.68	10.33
KXG37770	Sorghum	cytosol	16.48	9.77
KXG20989	Sorghum	cytosol	17.58	9.74
OQU92882	Sorghum	cytosol	6.81	5.71
KXG22816	Sorghum	plastid	5.05	4.83

Protein Annotations

EnsemblPlants:EER94469	EnsemblPlantsGene:SORBI_3001G294100	EntrezGene:8055627	Gene3D:2.20.110.10	InterPro:MORN	PANTHER:PTHR23084
PANTHER:PTHR23084:SF203	PFAM:PF02493	ProteinID:EER94469	ProteinID:EER94469.1	RefSeq:XP_002467471.1	SEG:seg
SMART:SM00698	SUPFAM:SSF82185	UniParc:UPI0001A82EC3	UniProt:C5WRG6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:57214905..57219349

Molecular Weight (calculated)

49837.0 Da

IEP (calculated)

10.110

GRAVY (calculated)

-0.411

Length

455 amino acids

Sequence
(BLAST)

001: MHHHHHHPAA APESAAPATD PPPPPPVLDP SSLRIHIPSS PHHALPSTPH KRPVVMTSSS SSSTPTRPSP SPFTPPRRRK VPAPAAPAGA AAARHLLRCL
101: HLRLRILLLI SLPSLYFLSP TPAILPRSLL ADFLSAAAFS CALLLLLCLS LPRLPFALPL PLPLRRARRS PILWSIGSSP SASATTPTTG HFVQVYSNGD
201: VYEGQFHRGR CTGSGVYYYY MSGRYEGDWV DGKYDGFGVE TWARGSRYRG QYRQGLRHGY GVYRFYTGDV YAGEWSNGQS HGYGVHTCED GSRYIGEFKR
301: GVKHGLGHYH FRNGDTYAGE YFADRMHGFG IYSFANGHRY EGAWHEGRRQ GLGMYSFRNG ETQAGHWQNG VLDTLSTQNF VPGSPIAVNH SKVLNAVQEA
401: RRAAEKAYDI PRVDDKVNRA VAAANKAANA ARVAAVKAAQ KRIPNNGDDL PLSVV

Best Arabidopsis Sequence Match ( AT4G17080.1 )
(BLAST)

001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL

Arabidopsis Description

AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.