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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, plasma membrane
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031777_P001 Maize cytosol, golgi, plasma membrane 85.37 88.34
Zm00001d050008_P001 Maize cytosol, golgi, plasma membrane 87.53 87.74
Zm00001d038430_P001 Maize cytosol, golgi, plasma membrane 58.27 84.97
Os08t0469700-01 Rice cytosol 55.64 83.15
KXG35752 Sorghum plastid 71.22 70.38
KRH26231 Soybean plastid 24.94 60.82
GSMUA_Achr1P21340_001 Banana endoplasmic reticulum, golgi 51.08 60.68
GSMUA_Achr5P17600_001 Banana endoplasmic reticulum, plasma membrane 48.2 58.43
VIT_18s0001g03290.t01 Wine grape cytosol, golgi, mitochondrion, plasma membrane, plastid 57.79 57.24
Solyc11g013010.1.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 55.88 54.44
PGSC0003DMT400002402 Potato cytosol, golgi, mitochondrion, nucleus 55.4 54.1
CDY00407 Canola cytosol, golgi, mitochondrion, plastid 51.08 53.65
CDY01306 Canola cytosol, golgi, mitochondrion, plastid 51.08 53.65
PGSC0003DMT400045267 Potato cytosol, golgi, mitochondrion, plasma membrane 53.48 53.22
CDX96565 Canola plastid 50.6 53.15
CDY38830 Canola plastid 50.6 53.15
Solyc06g060410.2.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 53.48 52.97
AT1G21920.1 Thale cress golgi, mitochondrion, peroxisome, plastid 51.8 51.8
Bra012299.1-P Field mustard mitochondrion 51.56 51.31
CDY30636 Canola mitochondrion 52.52 51.29
Bra031352.1-P Field mustard golgi, mitochondrion, peroxisome, plasma membrane 52.52 51.29
CDY04690 Canola golgi, mitochondrion, peroxisome, plasma membrane 52.28 51.05
Bra016399.1-P Field mustard cytosol, golgi, mitochondrion, nucleus 51.56 50.71
KRH53208 Soybean cytosol, mitochondrion, peroxisome, plasma membrane 52.04 50.47
CDX88382 Canola cytosol, golgi, mitochondrion, plasma membrane 46.52 50.39
KRH64714 Soybean cytosol, peroxisome, plasma membrane, plastid 52.28 50.23
CDY44523 Canola plastid 47.96 49.75
KRH16298 Soybean plastid 53.96 49.45
CDY38331 Canola cytosol, golgi, mitochondrion, plasma membrane 48.44 48.67
Bra008321.1-P Field mustard mitochondrion 48.44 48.67
AT1G77660.1 Thale cress cytosol, mitochondrion, plasma membrane, plastid 48.92 48.46
CDX79226 Canola cytosol 18.23 46.63
EER94469 Sorghum plastid 45.08 41.32
GSMUA_Achr7P18850_001 Banana endoplasmic reticulum, plasma membrane, vacuole 58.03 34.23
EER91019 Sorghum cytosol 20.62 11.86
OQU92571 Sorghum cytosol 20.38 11.33
EER99841 Sorghum cytosol 20.62 11.0
OQU82859 Sorghum plastid 19.66 10.46
KXG38228 Sorghum nucleus 20.38 10.33
KXG20989 Sorghum cytosol 19.42 9.87
KXG37770 Sorghum cytosol 17.75 9.64
OQU92882 Sorghum cytosol 7.43 5.71
KXG22816 Sorghum plastid 5.52 4.83
Protein Annotations
EnsemblPlants:OQU80624EnsemblPlantsGene:SORBI_3007G154701Gene3D:2.20.110.10GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:MORNPANTHER:PTHR23084PANTHER:PTHR23084:SF180PFAM:PF02493ProteinID:OQU80624ProteinID:OQU80624.1
SEG:segSMART:SM00698SUPFAM:SSF82185TMHMM:TMhelixUniParc:UPI000B426342UniProt:A0A1Z5RA21
MapMan:35.1:::::
Description
hypothetical protein
Coordinates
chr7:+:58774542..58776991
Molecular Weight (calculated)
44652.5 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.470
Length
417 amino acids
Sequence
(BLAST)
001: MDGHGGGGGK LTRTPSSLLR SPTVRAGPGG AASFHALDDP EPDDKKAQAP LLGSKPRALL RQAHHRLRPG PAQSALLLLL LLVLALAALL LRGGGHHLAL
101: LAAAAGLALA AAAAVARRTR SARGPRARPA ALAASVQWFI GEGDGEEVQQ QQREKKGGRR GVEVWEGVEF YSNGDRYEGE FHGGRCSGSG VYSFFGKGKY
201: EGDWVDGKYD GHGVESWARG SRYRGQYRQG LRHGHGVYRF YSGDCYAGEW AGGQSHGIGA QTCSDGSTYA GEFKGGVKHG LGCYHFRNGD RYAGEYFADK
301: IHGFGVYSFA NGHSYEGSWH EGKKQGFGMY AFRNGDERAG EWDSGILKNS LPLSDPAVQR ALQAARRAAD CAFHLPRVEE QVNKAVMAAN RAATAARVAA
401: IKAVQNRIDG KLCFINV
Best Arabidopsis Sequence Match ( AT1G21920.1 )
(BLAST)
001: MEKQAKLTRT QSSLLRSSSN LRSSYQSLSS IVEGEQDLEA GEKEEKQRRK PPKPFGSPNP KTGLTRINPG LAFTMVSLSF LSLSSFFFFV VFSQTDEILT
101: SENLLLALIF VAVALFFASK NISLLNQTVI AIKNLGFQNR DSKSKPVQWY IGDDSKPEKK VIKRFVKEGV QFYSNGDFYE GEFNKGKCNG SGVYYYFVRG
201: RYEGDWLDGR YDGHGIESWA RGSRYKGQYR QGLRHGFGVY RFYTGDCYAG EWFNGQSHGF GVQSCSDGSS YLGESRFGVK HGLGSYHFRN GDKYAGEYFG
301: DKIHGFGVYR FANGHCYEGA WHEGRKQGFG AYSFRNGDAK SGEWDSGVLV TSLPLTSEPV SRAVQAARET ANKAVNRRRV DEQVSRAVAA ANKAATAARV
401: AAVRAVQNQM DGKFCQS
Arabidopsis Description
Histone H3 K4-specific methyltransferase SET7/9 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SFE3]
SUBAcon: [mitochondrion,peroxisome,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.