Factsheet for VIT_15s0021g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
extracellular 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66442	Soybean	cytosol	22.67	84.21
KRH48871	Soybean	cytosol	22.06	81.95
PGSC0003DMT400034161	Potato	cytosol	70.04	71.78
Solyc10g061960.1.1	Tomato	cytosol	69.64	70.35
HORVU4Hr1G082070.1	Barley	endoplasmic reticulum	51.21	66.06
GSMUA_Achr2P10390_001	Banana	cytosol	59.31	61.3
Zm00001d000053_P001	Maize	cytosol, plastid	56.28	61.23
EER94469	Sorghum	plastid	56.07	60.88
GSMUA_Achr4P21670_001	Banana	cytosol	60.93	60.81
Zm00001d029979_P001	Maize	plastid	55.87	60.79
Os10t0565000-01	Rice	cytosol, plastid	55.47	58.67
VIT_02s0012g00090.t01	Wine grape	mitochondrion	66.8	58.3
TraesCSU01G007200.1	Wheat	nucleus	54.66	58.06
GSMUA_Achr4P26370_001	Banana	plastid	50.61	58.0
HORVU1Hr1G055220.1	Barley	cytosol	54.86	57.78
VIT_18s0001g03290.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane, plastid	42.31	49.64
VIT_13s0067g02840.t01	Wine grape	cytosol	18.02	11.31
VIT_12s0034g01790.t01	Wine grape	cytosol	17.21	10.73
VIT_18s0001g03820.t01	Wine grape	cytosol	17.81	10.51
VIT_08s0007g04700.t01	Wine grape	cytosol	17.0	10.02
VIT_08s0007g05240.t01	Wine grape	cytosol	12.55	9.42
VIT_06s0009g00860.t01	Wine grape	cytosol, endoplasmic reticulum	2.23	5.53

Protein Annotations

EntrezGene:100256437	wikigene:100256437	Gene3D:2.20.110.10	MapMan:35.1	ProteinID:CCB43915	ProteinID:CCB43915.1
UniProt:F6GVD2	EMBL:FN594952	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100256437
wikigene:LOC100256437	InterPro:MORN	PFAM:PF02493	PANTHER:PTHR23084	PANTHER:PTHR23084:SF203	SMART:SM00698
SUPFAM:SSF82185	TMHMM:TMhelix	UniParc:UPI00015C9671	ArrayExpress:VIT_15s0021g01010	EnsemblPlantsGene:VIT_15s0021g01010	EnsemblPlants:VIT_15s0021g01010.t01
RefSeq:XP_002269500	RefSeq:XP_002269500.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:-:10988998..10993730

Molecular Weight (calculated)

55554.4 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.447

Length

494 amino acids

Sequence
(BLAST)

001: MHHKKSEVQI GKESSGVSSD YNRTPFHTSS SESNAPHFLS SQDDPVTPTP STTPILSTPH KRPLMTHIPS LTKSPTFASA LHNYQASTAP QFNSHFPATP
101: QFNSHFSSLF SISPSLKTIA VRLFHRLRRF RVHFRFILLL TLPFFWLLVS HPTHSYFLDF FSAFFFSAAL LFSLNLALPR LPSIRLFLAR SFPIKLVSGC
201: AISRPALPVF WSIGSRPKPE KKANSGCCVE VYNNGDVYEG ELHKGKCLGS GVYYYYMSGR YEGDWVDGKY DGYGVETWAR GSRYRGQYRQ GLRNGFGVYR
301: FYTGDVYAGQ WSNGQSHGCG THTCEDGSRY VGEFKWGVKH GHGHYHFRNG DTYAGEYFAD KMHGFGIYNF ANGHRYEGAW HEGRRQGLGM YTFRNGETQS
401: GHWQNGILDI PSTQSTTYPV SPIAVYHSKV LNVVQEARRA AEKAYDVTKV DERVNRAVAA ANRAANAARV AAIKAVQKQI HQNSNNNNIP IPMV

Best Arabidopsis Sequence Match ( AT4G17080.1 )
(BLAST)

001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL

Arabidopsis Description

AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.