Factsheet for Solyc08g077730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17080.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G17080.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G17080.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G17080.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G17080.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G17080.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G17080.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G17080.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G17080.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G17080.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G17080.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G17080.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G17080.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G17080.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G17080.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G17080.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G17080.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004624	Potato	plastid	81.26	98.15
Bra040112.1-P	Field mustard	cytosol	31.55	70.51
HORVU4Hr1G082070.1	Barley	endoplasmic reticulum	43.4	59.27
KRH04250	Soybean	cytosol	46.65	56.35
Solyc10g061960.1.1	Tomato	cytosol	52.58	56.24
CDX76579	Canola	cytosol, endoplasmic reticulum, golgi	47.61	55.83
Bra021069.1-P	Field mustard	cytosol, golgi, plasma membrane	47.8	55.68
GSMUA_Achr2P10390_001	Banana	cytosol	49.9	54.6
EER94469	Sorghum	plastid	47.23	54.29
Zm00001d000053_P001	Maize	cytosol, plastid	47.04	54.19
Os10t0565000-01	Rice	cytosol, plastid	48.37	54.18
Zm00001d029979_P001	Maize	plastid	46.85	53.96
VIT_02s0012g00090.t01	Wine grape	mitochondrion	57.17	52.83
GSMUA_Achr4P21670_001	Banana	cytosol	49.9	52.73
CDY35600	Canola	cytosol	49.9	52.62
HORVU1Hr1G055220.1	Barley	cytosol	47.04	52.45
TraesCSU01G007200.1	Wheat	nucleus	46.27	52.04
GSMUA_Achr4P26370_001	Banana	plastid	42.83	51.97
CDY67767	Canola	cytosol	49.52	51.49
AT2G35170.1	Thale cress	cytosol	47.61	51.45
AT4G17080.1	Thale cress	cytosol, peroxisome, plasma membrane	50.29	51.27
CDY43465	Canola	cytosol	48.18	51.01
Solyc11g013010.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	37.28	45.56
Solyc06g060410.2.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	35.18	43.71
Solyc04g015470.2.1	Tomato	cytosol, vacuole	15.87	11.08
Solyc01g096410.2.1	Tomato	cytosol	15.87	10.65
Solyc01g104140.2.1	Tomato	cytosol	15.49	10.47
Solyc10g086320.1.1	Tomato	cytosol	15.49	10.27
Solyc10g078460.1.1	Tomato	mitochondrion	14.91	10.22
Solyc12g019880.1.1	Tomato	cytosol	14.72	10.21
Solyc11g013180.1.1	Tomato	cytosol	15.49	9.9
Solyc09g008480.2.1	Tomato	cytosol	15.3	9.84
Solyc12g013470.1.1	Tomato	cytosol	5.35	8.62
Solyc10g080750.1.1	Tomato	cytosol	3.44	4.23
Solyc04g017620.2.1	Tomato	cytosol	1.15	2.9
Solyc09g055130.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g077730.2.1	EnsemblPlantsGene:Solyc08g077730.2	Gene3D:2.20.110.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:MORN	PANTHER:PTHR23084	PANTHER:PTHR23084:SF203	PFAM:PF02493	SEG:seg	SMART:SM00698
SUPFAM:SSF82185	TMHMM:TMhelix	UniParc:UPI000276C69D	UniProt:K4CND2	MapMan:35.1	:

Description

No Description!

Coordinates

chr8:-:61622938..61627059

Molecular Weight (calculated)

58213.6 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.435

Length

523 amino acids

Sequence
(BLAST)

001: MHQKNIEVQI GQEHSDLSSN FISSNQKQYQ NPIFIPNQST PSENFCKINL QIKIPSPDSS TNQIHFRDEP ICQNQSPGKT LLSTPHKRPI MSQSSNLYHS
101: PTPSSSVNQQ VQHNHFKATV LKSSSSSNQS FLCPCSIPVL LATKRITLRL LHHSCHASWI RVHLKLFILL SLPSLYLLTS THYWGSFIYF LFIVAVIAFL
201: VVSLCVALPC VPSIRIFLAR TLSINLHSSP TASKSRPSVV WSIGSKPKQE SKPVSGCWVQ VYSNGDVYEG EFHKGKCSGS GVYYYRLNGR YEGDWIDGKY
301: DGYGVETWSK GSRYRGQYRQ GLRHGVGMYR SYTGDLYAGE WCNGQCHGYG VHTCEDGSSY TGEFKWGVKH GLGHYHFRNG DTYAGEYFAD KMHGFGVYHF
401: GNGHRYEGAW HEGKRQGFGI YTFRNGETQS GHWQNGILNV SSSLGSLPGS PSAIDHSKVL HAVQEARQAA EKAINVPNVD ERAKRAVTSA NKSATAARVA
501: AVKAVQNQMH QNGDSCHSPL SVV

Best Arabidopsis Sequence Match ( AT4G17080.1 )
(BLAST)

001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL

Arabidopsis Description

AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.