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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17080.1 Bra000214.1-P AT2G41090.1 17360592
AT4G17080.1 Bra000214.1-P AT2G41100.1 17360592
AT4G17080.1 Bra018296.1-P AT3G51920.1 17360592
AT4G17080.1 Bra033467.1-P AT3G51920.1 17360592
AT4G17080.1 Bra039723.1-P AT4G14640.1 17360592
AT4G17080.1 Bra002368.1-P AT5G21274.1 17360592
AT4G17080.1 Bra006595.1-P AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021069.1-P Field mustard cytosol, golgi, plasma membrane 95.3 49.67
CDY35600 Canola cytosol 99.57 46.98
CDY67767 Canola cytosol 99.57 46.32
HORVU4Hr1G082070.1 Barley endoplasmic reticulum 73.93 45.17
AT4G17080.1 Thale cress cytosol, peroxisome, plasma membrane 94.87 43.27
GSMUA_Achr4P26370_001 Banana plastid 72.65 39.44
Zm00001d000053_P001 Maize cytosol, plastid 75.64 38.99
Zm00001d029979_P001 Maize plastid 75.21 38.77
EER94469 Sorghum plastid 75.21 38.68
PGSC0003DMT400004624 Potato plastid 70.94 38.34
Os10t0565000-01 Rice cytosol, plastid 75.21 37.69
TraesCSU01G007200.1 Wheat nucleus 74.36 37.42
HORVU1Hr1G055220.1 Barley cytosol 73.93 36.89
GSMUA_Achr2P10390_001 Banana cytosol 74.79 36.61
KRH04250 Soybean cytosol 67.52 36.49
GSMUA_Achr4P21670_001 Banana cytosol 73.08 34.55
Bra031352.1-P Field mustard golgi, mitochondrion, peroxisome, plasma membrane 58.55 32.08
Bra016399.1-P Field mustard cytosol, golgi, mitochondrion, nucleus 58.12 32.08
VIT_02s0012g00090.t01 Wine grape mitochondrion 77.35 31.98
Bra012299.1-P Field mustard mitochondrion 56.84 31.74
Bra008321.1-P Field mustard mitochondrion 55.98 31.57
Solyc08g077730.2.1 Tomato cytosol 70.51 31.55
Bra016396.1-P Field mustard cytosol 28.21 8.99
Bra027121.1-P Field mustard cytosol 29.91 8.99
Bra019892.1-P Field mustard cytosol 29.06 8.96
Bra000219.1-P Field mustard cytosol 29.49 8.93
Bra040043.1-P Field mustard cytosol 26.92 8.84
Bra001278.1-P Field mustard cytosol 26.92 8.76
Bra029805.1-P Field mustard nucleus 30.34 8.69
Bra004606.1-P Field mustard cytosol 28.63 8.67
Bra007288.1-P Field mustard mitochondrion 27.78 8.49
Bra014660.1-P Field mustard cytosol 27.78 8.41
Bra003258.1-P Field mustard cytosol 26.92 8.32
Bra008331.1-P Field mustard cytosol 25.64 8.1
Bra031742.1-P Field mustard cytosol 22.22 7.5
Bra007756.1-P Field mustard cytosol 25.21 4.7
Bra037379.1-P Field mustard cytosol 11.11 4.12
Bra033262.1-P Field mustard cytosol 5.98 3.29
Protein Annotations
EnsemblPlants:Bra040112.1EnsemblPlants:Bra040112.1-PEnsemblPlantsGene:Bra040112Gene3D:2.20.110.10InterPro:MORNncoils:Coil
PANTHER:PTHR23084PANTHER:PTHR23084:SF203PFAM:PF02493SEG:segSMART:SM00698SUPFAM:SSF82185
UniParc:UPI0002544316UniProt:M4FG85MapMan:35.1:::
Description
AT4G17080 (E=9e-114) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT2G35170.1); Has 18005 Blast hits to 5199 proteins in 343 species: Archae - 0; Bacteria - 1726; Metazoa - 3046; Fungi - 93; Plants - 653; Viruses - 0; Other Eukaryotes - 12487 (source: NCBI BLink).
Coordinates
chrA01:-:10574088..10575318
Molecular Weight (calculated)
26160.1 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.837
Length
234 amino acids
Sequence
(BLAST)
001: MKGKYEGDWV DGKYDGFGVE TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE
101: YFADRMHGFG VYLFGNGHRY EGAWHEGRRQ GLGMYTFRNG ETQAGHWENG VLSCPTEQTT RPDSSFSISH SKVLDTVQQA RKAAEKAREV VKVEERVNRA
201: VMVANRAANA ARVAATKAVQ TQTYYSSGGG DDPL
Best Arabidopsis Sequence Match ( AT4G17080.1 )
(BLAST)
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Arabidopsis Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.