Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040112.1-P | Field mustard | cytosol | 43.27 | 94.87 |
| CDX76579 | Canola | cytosol, endoplasmic reticulum, golgi | 78.17 | 89.91 |
| Bra021069.1-P | Field mustard | cytosol, golgi, plasma membrane | 77.78 | 88.86 |
| CDY35600 | Canola | cytosol | 84.41 | 87.3 |
| CDY67767 | Canola | cytosol | 85.38 | 87.08 |
| CDY43465 | Canola | cytosol | 80.7 | 83.81 |
| AT2G35170.1 | Thale cress | cytosol | 68.42 | 72.52 |
| HORVU4Hr1G082070.1 | Barley | endoplasmic reticulum | 44.44 | 59.53 |
| PGSC0003DMT400004624 | Potato | plastid | 47.37 | 56.12 |
| KRH04250 | Soybean | cytosol | 46.0 | 54.5 |
| GSMUA_Achr2P10390_001 | Banana | cytosol | 49.9 | 53.56 |
| Zm00001d000053_P001 | Maize | cytosol, plastid | 46.59 | 52.64 |
| EER94469 | Sorghum | plastid | 46.59 | 52.53 |
| Zm00001d029979_P001 | Maize | plastid | 46.39 | 52.42 |
| GSMUA_Achr4P21670_001 | Banana | cytosol | 50.49 | 52.32 |
| Os10t0565000-01 | Rice | cytosol, plastid | 47.37 | 52.03 |
| TraesCSU01G007200.1 | Wheat | nucleus | 45.61 | 50.32 |
| HORVU1Hr1G055220.1 | Barley | cytosol | 46.0 | 50.32 |
| Solyc08g077730.2.1 | Tomato | cytosol | 51.27 | 50.29 |
| VIT_02s0012g00090.t01 | Wine grape | mitochondrion | 54.97 | 49.82 |
| GSMUA_Achr4P26370_001 | Banana | plastid | 40.94 | 48.72 |
| AT1G21920.1 | Thale cress | golgi, mitochondrion, peroxisome, plastid | 35.28 | 43.41 |
| AT1G77660.1 | Thale cress | cytosol, mitochondrion, plasma membrane, plastid | 35.48 | 43.23 |
| AT1G21980.1 | Thale cress | cytosol | 16.37 | 11.17 |
| AT2G41210.1 | Thale cress | cytosol | 16.57 | 11.01 |
| AT3G07960.1 | Thale cress | cytosol | 15.01 | 10.77 |
| AT1G10900.2 | Thale cress | cytosol | 15.79 | 10.74 |
| AT2G26420.2 | Thale cress | cytosol | 14.81 | 10.57 |
| AT3G56960.2 | Thale cress | cytosol | 15.98 | 10.53 |
| AT1G77740.1 | Thale cress | cytosol | 15.4 | 10.48 |
| AT1G60890.2 | Thale cress | cytosol | 15.79 | 10.37 |
| AT3G09920.1 | Thale cress | cytosol | 16.37 | 10.31 |
| AT4G01190.2 | Thale cress | mitochondrion | 4.09 | 5.11 |
| AT1G01460.1 | Thale cress | cytosol | 3.51 | 4.22 |
Protein Annotations
| Gene3D:2.20.110.10 | MapMan:35.1 | EntrezGene:827416 | UniProt:A0A178UYG3 | ProteinID:AEE83846.1 | ArrayExpress:AT4G17080 |
| EnsemblPlantsGene:AT4G17080 | RefSeq:AT4G17080 | TAIR:AT4G17080 | RefSeq:AT4G17080-TAIR-G | EnsemblPlants:AT4G17080.1 | TAIR:AT4G17080.1 |
| EMBL:AY125500 | Unigene:At.45809 | EMBL:BT003028 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0032259 | InterPro:MORN | RefSeq:NP_193441.5 | ProteinID:OAO98560.1 | PFAM:PF02493 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR23084 | PANTHER:PTHR23084:SF203 | UniProt:Q8L7W4 | SMART:SM00698 | SUPFAM:SSF82185 | TMHMM:TMhelix |
| UniParc:UPI000000BE9D | SEG:seg | : | : | : | : |
Description
AT4g17080/dl4570w [Source:UniProtKB/TrEMBL;Acc:Q8L7W4]
Coordinates
chr4:+:9601348..9604265
Molecular Weight (calculated)
57709.3 Da
IEP (calculated)
9.996
GRAVY (calculated)
-0.435
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLKNSTVAE RRYIGKETAG YLTSSSDLDP KPKIKHHRPL QVPEILTPDI GAGAGFSVYN NQVQAQSRHH LTVEIPDSSS HNLTSKRPVV VQSSNPFNVD
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
101: DFRRQQRASL GPISSYCPSY LLSWFSSSLP SIPSATNQKL LRHVLRVRLI CFHLRFLLLL SVPPLYIFFL LISFRFFLLF VFSIIAFSFV LSISLKFALP
201: HLPSIRLIIA RLLSLKLTPT RSSSSSQENT KHVIWSIGSK PVTEKKTNSG SWVQKYSSGD VYEGEFHRGK CSGSGVYYYS MKGKYEGDWI DGKYDGYGVE
301: TWAKGSRYRG QYRQGMRHGT GIYRFYTGDV YAGEWSNGQS HGCGVYTSED GSRFVGEFKW GVKHGLGHYH FRNGDTYAGE YFADRMHGFG VYQFGNGHRY
401: EGAWHEGRRQ GLGMYTFRNG ETQAGHWEDG VLNCPTEQTT RPDSSFSISH SKVVDTVQQA RKAAKKAREV VKVEERVNRA VMVANRAANA ARVAATKAVQ
501: TQTFHCSSGD DPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.