Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G081800.3 | |
| HORVU5Hr1G071910.1 | |
| HORVU7Hr1G048940.3 | |
| HORVU7Hr1G088900.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G412200.1 | Wheat | plastid | 93.99 | 92.97 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 89.07 | 91.57 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 91.8 | 90.81 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 83.06 | 83.06 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 77.05 | 78.77 |
| Zm00001d034279_P001 | Maize | extracellular | 73.77 | 75.0 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 81.97 | 68.81 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.59 | 60.0 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 32.79 | 59.41 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 56.83 | 55.03 |
| AT2G32580.1 | Thale cress | extracellular | 49.18 | 49.18 |
| CDY61410 | Canola | extracellular | 49.18 | 49.18 |
| Bra005603.1-P | Field mustard | extracellular | 49.18 | 49.18 |
| KRH25351 | Soybean | endoplasmic reticulum | 50.27 | 48.68 |
| CDY12195 | Canola | extracellular | 48.63 | 48.63 |
| AT1G05070.1 | Thale cress | extracellular | 48.09 | 47.83 |
| KRH11478 | Soybean | golgi | 46.99 | 47.51 |
| KRH56166 | Soybean | endoplasmic reticulum | 48.09 | 47.06 |
| CDY53389 | Canola | extracellular | 38.25 | 46.67 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 50.27 | 46.23 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 44.26 | 46.02 |
| Solyc07g049730.2.1 | Tomato | nucleus | 49.18 | 45.69 |
| CDY18288 | Canola | extracellular | 37.16 | 45.33 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 48.63 | 45.18 |
| CDY21300 | Canola | nucleus | 38.25 | 45.16 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 36.61 | 44.67 |
| CDX90862 | Canola | extracellular | 42.62 | 44.57 |
| Bra000792.1-P | Field mustard | extracellular | 42.62 | 44.57 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 42.62 | 43.82 |
| CDX90859 | Canola | extracellular | 41.53 | 43.43 |
| KRH22588 | Soybean | extracellular | 43.72 | 42.11 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 58.47 | 41.15 |
| HORVU2Hr1G086810.2 | Barley | cytosol | 28.42 | 20.63 |
Protein Annotations
| EMBL:AK368629 | EMBL:AK370414 | EnsemblPlants:HORVU5Hr1G099550.1 | EnsemblPlantsGene:HORVU5Hr1G099550 | InterPro:DUF1068 | ncoils:Coil |
| PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | PFAM:PF06364 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002007509 |
| UniProt:F2DXL1 | MapMan:35.2 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DXL1]
Coordinates
chrchr5H:+:610440310..610443516
Molecular Weight (calculated)
19606.1 Da
IEP (calculated)
4.708
GRAVY (calculated)
-0.453
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSSSSSS WGPSPAAVTA LVALLGLGVA AYIVGPPLYW HVAEALGRSP GACPACACDC DALPLLQLPE DCAKQFKEVK GRASGEETEK SITEMLIEEL
101: KQREEEATEA QQQADVKLLE AKKLASQYQK EADKCSSGMD TCEEAREKSA ESLLGQRKLT ALWEQRAREL GWKSGNVNPH GNQ
101: KQREEEATEA QQQADVKLLE AKKLASQYQK EADKCSSGMD TCEEAREKSA ESLLGQRKLT ALWEQRAREL GWKSGNVNPH GNQ
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.