Factsheet for Solyc07g049730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 2
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc07g066170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05070.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G05070.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT2G32580.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT2G32580.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G32580.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002793	Potato	extracellular, mitochondrion, plasma membrane, plastid	98.48	98.48
KRH56166	Soybean	endoplasmic reticulum	62.44	65.78
KRH25351	Soybean	endoplasmic reticulum	62.94	65.61
VIT_12s0059g01040.t01	Wine grape	extracellular, plasma membrane	65.99	65.33
Solyc02g080960.1.1	Tomato	cytosol, mitochondrion, nucleus	24.37	64.0
CDY18288	Canola	extracellular	47.72	62.67
Bra005603.1-P	Field mustard	extracellular	57.36	61.75
CDY12195	Canola	extracellular	57.36	61.75
CDY61410	Canola	extracellular	57.36	61.75
AT2G32580.1	Thale cress	extracellular	56.85	61.2
KRH22588	Soybean	extracellular	58.88	61.05
AT1G05070.1	Thale cress	extracellular	56.85	60.87
Bra015386.1-P	Field mustard	endoplasmic reticulum, extracellular	45.18	59.33
CDY53389	Canola	extracellular	44.67	58.67
TraesCS5B01G416100.1	Wheat	cytosol, mitochondrion, nucleus	32.99	56.03
TraesCS5D01G421600.1	Wheat	cytosol, mitochondrion, nucleus	31.47	55.86
GSMUA_Achr5P24760_001	Banana	golgi	53.3	55.56
TraesCS5A01G412400.1	Wheat	cytosol, mitochondrion, nucleus	31.98	54.31
TraesCS5D01G421400.1	Wheat	endoplasmic reticulum, plasma membrane	46.19	51.12
EER90798	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	45.69	50.28
TraesCS5B01G416000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.21	50.27
TraesCS5A01G412700.1	Wheat	endoplasmic reticulum, plasma membrane	44.67	49.44
TraesCS5A01G412200.1	Wheat	plastid	46.19	49.19
Os03t0777500-01	Rice	endoplasmic reticulum, plasma membrane	45.69	49.18
HORVU5Hr1G099550.1	Barley	endoplasmic reticulum, plasma membrane	45.69	49.18
Zm00001d034279_P001	Maize	extracellular	44.67	48.89
TraesCS5B01G416300.1	Wheat	endoplasmic reticulum, plasma membrane	44.16	48.6
TraesCS5A01G412800.1	Wheat	extracellular, plasma membrane	43.65	48.31
Solyc07g005180.2.1	Tomato	nucleus	35.03	40.83
GSMUA_Achr6P04630_001	Banana	plastid	53.81	40.77
Solyc01g098600.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	28.43	40.29
HORVU5Hr1G099640.1	Barley	extracellular, mitochondrion, plasma membrane, plastid	42.64	38.53

Protein Annotations

EnsemblPlants:Solyc07g049730.2.1	EnsemblPlantsGene:Solyc07g049730.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF1068
PANTHER:PTHR32254	PANTHER:PTHR32254:SF11	PFAM:PF06364	TMHMM:TMhelix	UniParc:UPI000276B44A	UniProt:K4CF74
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:60074897..60078861

Molecular Weight (calculated)

21701.0 Da

IEP (calculated)

6.023

GRAVY (calculated)

-0.429

Length

197 amino acids

Sequence
(BLAST)

001: MALNQAGRSS PCSPRVLKSV LGLMAISLAA YILGPPLYWH LMEGLVAVSR SSSVTTCPPC NCDCNSEPFF FIPPGLSNVS LTDCAKRDPE VGEDTEKNFA
101: DLLSEELKLR EAEASENQRK ADMALLEAKK LTSQYMKEAD KCNSGMETCE EAREKAEVLL LAQKKMTATW EMRARQKGWK EGAAKSRTQS QGNVQTM

Best Arabidopsis Sequence Match ( AT1G05070.1 )
(BLAST)

001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA

Arabidopsis Description

At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.