Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05070.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT1G05070.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18288 | Canola | extracellular | 90.67 | 90.67 |
| AT1G05070.1 | Thale cress | extracellular | 83.33 | 67.93 |
| Bra005603.1-P | Field mustard | extracellular | 77.33 | 63.39 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 40.0 | 51.72 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 38.0 | 51.35 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 39.33 | 50.86 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 66.0 | 49.75 |
| KRH56166 | Soybean | endoplasmic reticulum | 62.0 | 49.73 |
| KRH25351 | Soybean | endoplasmic reticulum | 60.0 | 47.62 |
| Solyc07g049730.2.1 | Tomato | nucleus | 59.33 | 45.18 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 59.33 | 45.18 |
| KRH22588 | Soybean | extracellular | 56.67 | 44.74 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 52.67 | 41.8 |
| Bra000792.1-P | Field mustard | extracellular | 48.67 | 41.71 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 46.0 | 38.55 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 47.33 | 38.38 |
| Zm00001d034279_P001 | Maize | extracellular | 46.0 | 38.33 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 45.33 | 38.2 |
| TraesCS5A01G412200.1 | Wheat | plastid | 46.0 | 37.3 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 45.33 | 37.16 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.0 | 37.08 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 44.67 | 36.61 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 43.33 | 36.52 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 43.33 | 36.31 |
| Bra011240.1-P | Field mustard | extracellular, golgi | 40.0 | 34.68 |
| Bra010260.1-P | Field mustard | extracellular, golgi | 39.33 | 34.3 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 52.0 | 30.0 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 41.33 | 28.44 |
Protein Annotations
| EnsemblPlants:Bra015386.1 | EnsemblPlants:Bra015386.1-P | EnsemblPlantsGene:Bra015386 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | InterPro:DUF1068 | ncoils:Coil |
| PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | PFAM:PF06364 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0002543AD5 |
| UniProt:M4DFW3 | MapMan:35.2 | : | : | : | : |
Description
AT1G05070 (E=2e-054) | unknown protein
Coordinates
chrA10:+:2156526..2157487
Molecular Weight (calculated)
16542.6 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.745
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHAAALKV GLALMGLSMP LLTISKGLSN ASFADCARHD PEVNEDTEKN YAELLTEELK LRETDSLEKH KRADMGLLEA KKVTSSYQKE ADKCNSGMET
101: CEEVREKAEL ALAEQKKLTS KWEERARQKG WRDGATKSNI KTNSNAQAAA
101: CEEVREKAEL ALAEQKKLTS KWEERARQKG WRDGATKSNI KTNSNAQAAA
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.