Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56166 | Soybean | endoplasmic reticulum | 92.06 | 93.05 |
| KRH22588 | Soybean | extracellular | 69.31 | 68.95 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 68.78 | 65.33 |
| Bra005603.1-P | Field mustard | extracellular | 61.38 | 63.39 |
| CDY12195 | Canola | extracellular | 61.38 | 63.39 |
| CDY61410 | Canola | extracellular | 61.38 | 63.39 |
| Solyc07g049730.2.1 | Tomato | nucleus | 65.61 | 62.94 |
| CDY18288 | Canola | extracellular | 49.21 | 62.0 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 64.55 | 61.93 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 32.28 | 60.4 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 37.04 | 60.34 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 47.62 | 60.0 |
| AT2G32580.1 | Thale cress | extracellular | 57.67 | 59.56 |
| CDY53389 | Canola | extracellular | 47.09 | 59.33 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 59.26 | 59.26 |
| AT1G05070.1 | Thale cress | extracellular | 57.14 | 58.7 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 34.39 | 58.56 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 34.92 | 56.9 |
| KRH11478 | Soybean | golgi | 51.32 | 53.59 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 48.15 | 51.12 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 47.62 | 50.28 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 47.62 | 50.28 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 48.68 | 50.27 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 47.09 | 50.0 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 48.68 | 49.73 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 48.15 | 49.73 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 46.56 | 49.44 |
| TraesCS5A01G412200.1 | Wheat | plastid | 48.15 | 49.19 |
| Zm00001d034279_P001 | Maize | extracellular | 46.03 | 48.33 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 59.26 | 43.08 |
| KRH37920 | Soybean | endoplasmic reticulum | 39.68 | 42.37 |
| KRH12934 | Soybean | endoplasmic reticulum | 39.15 | 41.57 |
| KRG96872 | Soybean | mitochondrion, plastid | 37.57 | 39.89 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 45.5 | 39.45 |
| KRH68600 | Soybean | mitochondrion, plastid | 35.98 | 38.42 |
Protein Annotations
| EMBL:ACUP02007238 | EMBL:BT092253 | EnsemblPlants:KRH25351 | EnsemblPlantsGene:GLYMA_12G096800 | EntrezGene:100527412 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1068 | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | PFAM:PF06364 |
| ProteinID:KRH25351 | ProteinID:KRH25351.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0000005DAD | UniProt:C6T492 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:8190427..8192988
Molecular Weight (calculated)
20615.6 Da
IEP (calculated)
6.347
GRAVY (calculated)
-0.281
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MALNQSKAVL LRVSLVVVAL FIAGYIVGPP LYWHFVEGLA AVNHSSSTCA PCICDCSSQP ILSIPQGLSN TSFGDCAKPD PEVSGDTEKN FAELLAEELK
101: LRENQAVENQ QHADMALLEA KKIASQYQKE ADKCNSGMET CEEAREKAEL TLVTQKKLTA LWELRARKKG WKEGLANSHA HSQGKVQSS
101: LRENQAVENQ QHADMALLEA KKIASQYQKE ADKCNSGMET CEEAREKAEL TLVTQKKLTA LWELRARKKG WKEGLANSHA HSQGKVQSS
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.