Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- golgi 2
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 34.39 | 64.36 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.34 | 61.33 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 36.51 | 59.48 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 34.92 | 59.46 |
| KRH56166 | Soybean | endoplasmic reticulum | 58.73 | 59.36 |
| KRH25351 | Soybean | endoplasmic reticulum | 59.26 | 59.26 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 35.98 | 58.62 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 79.89 | 58.08 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 54.5 | 57.54 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 55.03 | 56.83 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 53.44 | 56.74 |
| AT2G32580.1 | Thale cress | extracellular | 54.5 | 56.28 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 52.91 | 56.18 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 52.38 | 55.62 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 53.97 | 55.14 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 57.67 | 54.77 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 51.85 | 54.75 |
| CDY61410 | Canola | extracellular | 52.91 | 54.64 |
| CDY12195 | Canola | extracellular | 52.91 | 54.64 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 52.91 | 54.64 |
| Bra005603.1-P | Field mustard | extracellular | 52.91 | 54.64 |
| TraesCS5A01G412200.1 | Wheat | plastid | 53.44 | 54.59 |
| KRH11478 | Soybean | golgi | 51.85 | 54.14 |
| Zm00001d034279_P001 | Maize | extracellular | 51.32 | 53.89 |
| AT1G05070.1 | Thale cress | extracellular | 52.38 | 53.8 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 49.74 | 53.41 |
| Solyc07g049730.2.1 | Tomato | nucleus | 55.56 | 53.3 |
| KRH22588 | Soybean | extracellular | 53.44 | 53.16 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 55.03 | 52.79 |
| CDY53389 | Canola | extracellular | 41.8 | 52.67 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 41.8 | 52.67 |
| CDX90862 | Canola | extracellular | 48.68 | 52.57 |
| CDX90859 | Canola | extracellular | 48.68 | 52.57 |
| Bra000792.1-P | Field mustard | extracellular | 48.68 | 52.57 |
| CDY18288 | Canola | extracellular | 41.27 | 52.0 |
| CDY21300 | Canola | nucleus | 42.33 | 51.61 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 48.15 | 51.12 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 51.32 | 44.5 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 41.8 | 43.89 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P24760_001 | EnsemblPlants:GSMUA_Achr5T24760_001 | EnsemblPlantsGene:GSMUA_Achr5G24760_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1068 | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | PFAM:PF06364 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00029515FD | UniProt:M0T1F1 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G24760_001]
Coordinates
chr5:+:26028239..26031773
Molecular Weight (calculated)
20608.8 Da
IEP (calculated)
5.768
GRAVY (calculated)
-0.369
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGGLVVVGG GGGGGGGGVN PTLVRVILAV MALGLAGYIV GPPLYWHLAE AFGRSSPCPP CAACDCSSQP LLSLPQELIN VSFTDCAKRD PEVSEEMDKN
101: FTDLLAEELK LREKESTDAQ HRADVTLLEA KKLASQYQKE ADKCNSGMDT CEEAREKAET VLLEQKKLTM MWEQRARQRG WKKPHAFQR
101: FTDLLAEELK LREKESTDAQ HRADVTLLEA KKLASQYQKE ADKCNSGMDT CEEAREKAET VLLEQKKLTM MWEQRARQRG WKKPHAFQR
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.