Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 6
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011240.1-P | Field mustard | extracellular, golgi | 69.44 | 72.25 |
| CDX68715 | Canola | extracellular, golgi | 68.89 | 72.09 |
| CDY28236 | Canola | extracellular, golgi | 68.89 | 71.68 |
| Bra010260.1-P | Field mustard | extracellular, golgi | 68.33 | 71.51 |
| AT4G30996.1 | Thale cress | extracellular, golgi | 67.78 | 70.93 |
| CDY23272 | Canola | extracellular, golgi | 67.78 | 70.93 |
| CDY51486 | Canola | extracellular, golgi | 67.78 | 70.93 |
| CDX72284 | Canola | extracellular, golgi | 66.67 | 69.36 |
| AT2G24290.1 | Thale cress | extracellular, golgi | 66.67 | 69.36 |
| CDY13405 | Canola | cytosol | 46.67 | 68.85 |
| VIT_11s0206g00100.t01 | Wine grape | extracellular, golgi | 66.11 | 68.79 |
| Solyc07g005180.2.1 | Tomato | nucleus | 62.78 | 66.86 |
| PGSC0003DMT400008268 | Potato | extracellular, golgi | 62.22 | 66.27 |
| Zm00001d025794_P002 | Maize | golgi, plasma membrane, plastid | 66.67 | 63.49 |
| VIT_00s0912g00010.t01 | Wine grape | cytosol | 40.56 | 63.48 |
| Os04t0501800-00 | Rice | golgi, plasma membrane | 68.89 | 63.27 |
| KRH12934 | Soybean | endoplasmic reticulum | 62.22 | 62.92 |
| TraesCS2B01G375800.1 | Wheat | golgi | 65.56 | 62.77 |
| TraesCS2A01G356500.1 | Wheat | golgi | 65.0 | 62.23 |
| KRH37920 | Soybean | endoplasmic reticulum | 61.11 | 62.15 |
| TraesCS2D01G355400.1 | Wheat | golgi | 65.0 | 61.58 |
| EES11077 | Sorghum | mitochondrion, plastid | 66.67 | 61.54 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 43.89 | 41.8 |
| HORVU2Hr1G086810.2 | Barley | cytosol | 48.89 | 34.92 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 45.56 | 31.54 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP18840_001 | EnsemblPlants:GSMUA_AchrUn_randomT18840_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG18840_001 | InterPro:DUF1068 | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF4 |
| PFAM:PF06364 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002969F0F | UniProt:M0UAE3 |
| MapMan:35.2 | : | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18840_001]
Coordinates
chrchrUn_random:-:90444901..90450315
Molecular Weight (calculated)
19644.6 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.207
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAARPSGA CLKCLLVVFA VASALCVSGP ALYWRFKKGF ASTQSLSSSS HPGCAPCVCD CPPPLSLDAI APGLLNLSVT DCGKNDPELS KEMEKHFVDL
101: LTEELKLQEA VAQEHAHHMN ATLVDAKRLA SQYQKEAEKC IAATEICEEA RERAEAALRK EKKITAMWER RARQLGWQEA
101: LTEELKLQEA VAQEHAHHMN ATLVDAKRLA SQYQKEAEKC IAATEICEEA RERAEAALRK EKKITAMWER RARQLGWQEA
001: MARRSGNCMR CLVIFSVVSA LLVCGPALYW KLNKGFVGSA RSTNSICPPC VCDFPPPLSL LQIAPGLANL SITGCGSDDP ELKEEMEKPF VDLLTEELKL
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ38]
SUBAcon: [extracellular,golgi]
SUBAcon: [extracellular,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.