Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28236 | Canola | extracellular, golgi | 98.84 | 98.84 |
| CDX68715 | Canola | extracellular, golgi | 97.11 | 97.67 |
| Bra010260.1-P | Field mustard | extracellular, golgi | 94.22 | 94.77 |
| AT4G30996.1 | Thale cress | extracellular, golgi | 90.17 | 90.7 |
| VIT_11s0206g00100.t01 | Wine grape | extracellular, golgi | 75.14 | 75.14 |
| VIT_00s0912g00010.t01 | Wine grape | cytosol | 49.13 | 73.91 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 72.25 | 69.44 |
| Solyc07g005180.2.1 | Tomato | nucleus | 65.9 | 67.46 |
| PGSC0003DMT400008268 | Potato | extracellular, golgi | 65.9 | 67.46 |
| KRH12934 | Soybean | endoplasmic reticulum | 67.63 | 65.73 |
| KRH37920 | Soybean | endoplasmic reticulum | 66.47 | 64.97 |
| TraesCS2A01G356500.1 | Wheat | golgi | 63.58 | 58.51 |
| Os04t0501800-00 | Rice | golgi, plasma membrane | 65.9 | 58.16 |
| Zm00001d025794_P002 | Maize | golgi, plasma membrane, plastid | 62.43 | 57.14 |
| TraesCS2B01G375800.1 | Wheat | golgi | 61.85 | 56.91 |
| TraesCS2D01G355400.1 | Wheat | golgi | 62.43 | 56.84 |
| EES11077 | Sorghum | mitochondrion, plastid | 62.43 | 55.38 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 34.68 | 40.0 |
| Bra005603.1-P | Field mustard | extracellular | 41.62 | 39.34 |
| Bra000792.1-P | Field mustard | extracellular | 39.31 | 38.86 |
| HORVU2Hr1G086810.2 | Barley | cytosol | 49.13 | 33.73 |
Protein Annotations
| EnsemblPlants:Bra011240.1 | EnsemblPlants:Bra011240.1-P | EnsemblPlantsGene:Bra011240 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF4 | PFAM:PF06364 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002546BB2 | UniProt:M4D436 | MapMan:35.2 | : | : |
Description
AT4G30996 (E=2e-077) | unknown protein
Coordinates
chrA01:-:3129623..3130660
Molecular Weight (calculated)
19190.1 Da
IEP (calculated)
5.393
GRAVY (calculated)
-0.242
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRSGDCMK CLVIFAVVSA LVVCGPALYW RFNKGFVGSS TRKSSVCPPC VCDCPPPVSL LEIAPGLANL TVTDCGGDDP ELKQEMEKQF VDLLTEELKL
101: QEAVADEHTR HMNVTLLEAK RVASQYQKEA EKCNAATEIC ESARERAEAL LIKERKITAL WEKRARQSGW EGE
101: QEAVADEHTR HMNVTLLEAK RVASQYQKEA EKCNAATEIC ESARERAEAL LIKERKITAL WEKRARQSGW EGE
001: MPRRSGDCMR CLVIFAVVSA LVVCGPALYW KFNKGFVGST RANSLCPPCV CDCPPPLSLL QIAPGLANLS ITDCGSDDPE LKQEMEKQFV DLLTEELKLQ
101: EAVADEHSRH MNVTLAEAKR VASQYQKEAE KCNAATEICE SARERAEALL IKERKITSLW EKRARQSGWE GE
101: EAVADEHSRH MNVTLAEAKR VASQYQKEAE KCNAATEICE SARERAEALL IKERKITSLW EKRARQSGWE GE
Arabidopsis Description
NKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW02]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.