Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90862 | Canola | extracellular | 98.86 | 98.86 |
| CDX90859 | Canola | extracellular | 92.0 | 92.0 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 90.86 | 90.34 |
| CDY21300 | Canola | nucleus | 75.43 | 85.16 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.0 | 56.0 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 32.0 | 55.45 |
| KRH11478 | Soybean | golgi | 53.71 | 51.93 |
| Bra005603.1-P | Field mustard | extracellular | 52.57 | 50.27 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 32.57 | 49.14 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 52.57 | 48.68 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 41.71 | 48.67 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 30.29 | 47.75 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 30.86 | 46.55 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 45.14 | 44.38 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 45.14 | 43.17 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 44.57 | 42.62 |
| TraesCS5A01G412200.1 | Wheat | plastid | 44.57 | 42.16 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 44.57 | 42.16 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 42.29 | 41.34 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 42.29 | 41.34 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.71 | 41.01 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 41.14 | 40.45 |
| Zm00001d034279_P001 | Maize | extracellular | 40.57 | 39.44 |
| Bra011240.1-P | Field mustard | extracellular, golgi | 38.86 | 39.31 |
| Bra010260.1-P | Field mustard | extracellular, golgi | 38.29 | 38.95 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 52.0 | 35.0 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 41.14 | 33.03 |
Protein Annotations
| EnsemblPlants:Bra000792.1 | EnsemblPlants:Bra000792.1-P | EnsemblPlantsGene:Bra000792 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | PFAM:PF06364 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00025404A5 | UniProt:M4C9B3 | MapMan:35.2 | : | : |
Description
AT4G04360 (E=1e-063) | unknown protein
Coordinates
chrA03:-:13145454..13146152
Molecular Weight (calculated)
19920.5 Da
IEP (calculated)
4.757
GRAVY (calculated)
-0.619
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRRQKKTAK VVTGVMGLCI LAYIAVPSLH WHLNETIEDS LHSSCPPCVC DCSSQPLLSI PDGLSNHSFL DCMRREEGSE ESESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKSEGTLDEQ RRLSYMWELR ARQNGWKEVI SSNDL
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKSEGTLDEQ RRLSYMWELR ARQNGWKEVI SSNDL
001: MTRRQKKTAK VVTVVMGLCI VAYIAGPSLY WHLNETIADS LHSSCPPCVC DCSSQPLLSI PDGLSNHSFL DCMRHEEGSE ESESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
Arabidopsis Description
Protein of unknown function (DUF1068) [Source:TAIR;Acc:AT4G04360]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.