Factsheet for TraesCS5B01G416000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32580.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT2G32580.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G412200.1	Wheat	plastid	95.14	95.14
HORVU5Hr1G099550.1	Barley	endoplasmic reticulum, plasma membrane	90.81	91.8
TraesCS5D01G421400.1	Wheat	endoplasmic reticulum, plasma membrane	88.11	91.57
TraesCS5B01G416300.1	Wheat	endoplasmic reticulum, plasma membrane	85.95	88.83
TraesCS5B01G416100.1	Wheat	cytosol, mitochondrion, nucleus	52.43	83.62
Os03t0777500-01	Rice	endoplasmic reticulum, plasma membrane	82.7	83.61
EER90798	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	74.59	77.09
Zm00001d034279_P001	Maize	extracellular	71.89	73.89
Solyc02g080960.1.1	Tomato	cytosol, mitochondrion, nucleus	24.32	60.0
KRH36493	Soybean	cytosol, mitochondrion, nucleus	31.89	58.42
GSMUA_Achr5P24760_001	Banana	golgi	55.14	53.97
Bra005603.1-P	Field mustard	extracellular	50.27	50.82
CDY61410	Canola	extracellular	50.27	50.82
CDY12195	Canola	extracellular	49.73	50.27
AT2G32580.1	Thale cress	extracellular	49.73	50.27
AT1G05070.1	Thale cress	extracellular	49.73	50.0
CDY53389	Canola	extracellular	40.0	49.33
KRH25351	Soybean	endoplasmic reticulum	49.73	48.68
KRH56166	Soybean	endoplasmic reticulum	48.65	48.13
CDY18288	Canola	extracellular	38.92	48.0
KRH11478	Soybean	golgi	46.49	47.51
Bra015386.1-P	Field mustard	endoplasmic reticulum, extracellular	38.38	47.33
VIT_12s0059g01040.t01	Wine grape	extracellular, plasma membrane	50.81	47.24
Solyc07g049730.2.1	Tomato	nucleus	50.27	47.21
PGSC0003DMT400002793	Potato	extracellular, mitochondrion, plasma membrane, plastid	49.73	46.7
AT4G04360.1	Thale cress	extracellular, golgi	43.78	46.02
CDX90862	Canola	extracellular	42.16	44.57
Bra000792.1-P	Field mustard	extracellular	42.16	44.57
CDX94551	Canola	extracellular, golgi, vacuole	42.7	44.38
CDY21300	Canola	nucleus	36.76	43.87
CDX90859	Canola	extracellular	41.08	43.43
KRH22588	Soybean	extracellular	44.32	43.16
GSMUA_Achr6P04630_001	Banana	plastid	57.3	40.77
TraesCS2B01G375800.1	Wheat	golgi	34.05	33.51

Protein Annotations

EnsemblPlants:TraesCS5B01G416000.1	EnsemblPlantsGene:TraesCS5B01G416000	InterPro:DUF1068	ncoils:Coil	PANTHER:PTHR32254	PANTHER:PTHR32254:SF11
PFAM:PF06364	SEG:seg	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5B:-:590183117..590184707

Molecular Weight (calculated)

19998.6 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.524

Length

185 amino acids

Sequence
(BLAST)

001: MAGGSSSSSS SSWGPSPAAV KALVALLGLG VAAYIVGPPL YWHVAEALGR SPGACPACAC DCDALPLLQL PEDCAKQFKE VKNHASGEET EKNITEMLIE
101: ELKQREEEAT EAQQQADVKL LEAKKLASQY QKEADKCSSG MDTCEEAREK SAESLLSQRK LTALWEERAR ELGWKPGNVK PHQNQ

Best Arabidopsis Sequence Match ( AT2G32580.1 )
(BLAST)

001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.