Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P24760_001 | Banana | golgi | 58.08 | 79.89 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 26.54 | 68.32 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 19.23 | 66.67 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 26.15 | 61.26 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 27.31 | 61.21 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 41.54 | 60.34 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 26.54 | 59.48 |
| KRH25351 | Soybean | endoplasmic reticulum | 43.08 | 59.26 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 40.38 | 58.99 |
| KRH56166 | Soybean | endoplasmic reticulum | 42.31 | 58.82 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 41.15 | 58.47 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 40.0 | 58.43 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 39.62 | 57.87 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 40.38 | 57.38 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 40.77 | 57.3 |
| Zm00001d034279_P001 | Maize | extracellular | 39.62 | 57.22 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 38.85 | 56.42 |
| KRH11478 | Soybean | golgi | 39.23 | 56.35 |
| Bra005603.1-P | Field mustard | extracellular | 39.23 | 55.74 |
| CDY12195 | Canola | extracellular | 39.23 | 55.74 |
| CDY61410 | Canola | extracellular | 39.23 | 55.74 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 37.69 | 55.68 |
| TraesCS5A01G412200.1 | Wheat | plastid | 39.62 | 55.68 |
| AT1G05070.1 | Thale cress | extracellular | 39.23 | 55.43 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 42.31 | 55.28 |
| KRH22588 | Soybean | extracellular | 40.0 | 54.74 |
| AT2G32580.1 | Thale cress | extracellular | 38.46 | 54.64 |
| Solyc07g049730.2.1 | Tomato | nucleus | 40.77 | 53.81 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 40.38 | 53.3 |
| CDX90859 | Canola | extracellular | 35.77 | 53.14 |
| CDX90862 | Canola | extracellular | 35.38 | 52.57 |
| CDY21300 | Canola | nucleus | 31.15 | 52.26 |
| CDY53389 | Canola | extracellular | 30.0 | 52.0 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 30.0 | 52.0 |
| Bra000792.1-P | Field mustard | extracellular | 35.0 | 52.0 |
| CDY18288 | Canola | extracellular | 29.62 | 51.33 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 35.0 | 51.12 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 40.77 | 48.62 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 31.54 | 45.56 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P04630_001 | EnsemblPlants:GSMUA_Achr6T04630_001 | EnsemblPlantsGene:GSMUA_Achr6G04630_001 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 |
| PANTHER:PTHR32254:SF11 | PFAM:PF06364 | SEG:seg | UniParc:UPI0002964C2F | UniProt:M0T461 | MapMan:35.2 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G04630_001]
Coordinates
chr6:+:3170113..3174239
Molecular Weight (calculated)
28193.1 Da
IEP (calculated)
7.503
GRAVY (calculated)
-0.215
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKSLLHHH SLGAALGTAA PLLAAASHPI SGGGLILLPP PLFSLPPACP SHFRHRLPPL LPSPPFLRIC WDQRRKRGQM AGGLVGGSGG GLNPNVVRFV
101: LVVMALGLAG YIVGPPLYWH LAEALGRSSA CPLCAPCDCS AQPLLSLPQE LINVSSTDCA KHDPEVSEEM DKNFTDLLAE ELKLREEEAT EAQHRADVKL
201: LEAKKLASQY QKEADKCNSG MDTCEEAREK AEAALSEQKK LTSMWELRAR QRGWKNTHAY
101: LVVMALGLAG YIVGPPLYWH LAEALGRSSA CPLCAPCDCS AQPLLSLPQE LINVSSTDCA KHDPEVSEEM DKNFTDLLAE ELKLREEEAT EAQHRADVKL
201: LEAKKLASQY QKEADKCNSG MDTCEEAREK AEAALSEQKK LTSMWELRAR QRGWKNTHAY
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.