Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 85.34 | 85.34 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 37.93 | 58.67 |
| TraesCS5A01G412200.1 | Wheat | plastid | 89.66 | 56.22 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 48.28 | 55.45 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 80.17 | 52.25 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 80.17 | 52.25 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 80.17 | 50.82 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 75.0 | 48.6 |
| Zm00001d034279_P001 | Maize | extracellular | 72.41 | 46.67 |
| CDY18288 | Canola | extracellular | 51.72 | 40.0 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 50.86 | 39.33 |
| CDY53389 | Canola | extracellular | 50.86 | 39.33 |
| CDY21300 | Canola | nucleus | 49.14 | 36.77 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 58.62 | 35.98 |
| KRH56166 | Soybean | endoplasmic reticulum | 56.9 | 35.29 |
| KRH25351 | Soybean | endoplasmic reticulum | 56.9 | 34.92 |
| AT1G05070.1 | Thale cress | extracellular | 54.31 | 34.24 |
| CDY61410 | Canola | extracellular | 53.45 | 33.88 |
| CDY12195 | Canola | extracellular | 53.45 | 33.88 |
| Bra005603.1-P | Field mustard | extracellular | 53.45 | 33.88 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 50.0 | 32.95 |
| AT2G32580.1 | Thale cress | extracellular | 51.72 | 32.79 |
| CDX90862 | Canola | extracellular | 49.14 | 32.57 |
| Bra000792.1-P | Field mustard | extracellular | 49.14 | 32.57 |
| KRH11478 | Soybean | golgi | 50.0 | 32.04 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 49.14 | 32.02 |
| CDX90859 | Canola | extracellular | 48.28 | 32.0 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 54.31 | 31.98 |
| Solyc07g049730.2.1 | Tomato | nucleus | 54.31 | 31.98 |
| KRH22588 | Soybean | extracellular | 50.86 | 31.05 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 52.59 | 30.65 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 59.48 | 26.54 |
| TraesCS2A01G356500.1 | Wheat | golgi | 37.93 | 23.4 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G412400.1 | EnsemblPlantsGene:TraesCS5A01G412400 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
| PFAM:PF06364 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:601166611..601166961
Molecular Weight (calculated)
13348.8 Da
IEP (calculated)
4.915
GRAVY (calculated)
-1.014
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPDCAKQFK EVKTHASGEE TEKSIIEMLI EELQQREEEA TEAQQQADVK LLEAKKLALQ YQKEADKCSS GMDTCEEARE KSAESLLGQR KLTVLWEERA
101: RELGWKPGNV KPHRNQ
101: RELGWKPGNV KPHRNQ
001: MVHSLVNCAK RDPEVNEDTE KNYAELLTEE LKQREAASME KHKRVDTGLL EAKKITSSYQ KEADKCNSGM ETCEEAREKA EKALVEQKKL TSMWEQRARQ
101: KGYKDGATKS TVKSKSGTEV A
101: KGYKDGATKS TVKSKSGTEV A
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.