Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90862 | Canola | extracellular | 87.08 | 88.57 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 86.52 | 87.5 |
| CDY21300 | Canola | nucleus | 73.03 | 83.87 |
| CDX90859 | Canola | extracellular | 80.9 | 82.29 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 23.6 | 56.0 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 31.46 | 55.45 |
| KRH11478 | Soybean | golgi | 53.37 | 52.49 |
| CDY12195 | Canola | extracellular | 52.25 | 50.82 |
| CDY61410 | Canola | extracellular | 52.25 | 50.82 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 32.02 | 49.14 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 51.12 | 48.15 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.78 | 47.75 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 29.78 | 45.69 |
| CDY53389 | Canola | extracellular | 38.2 | 45.33 |
| CDY18288 | Canola | extracellular | 38.2 | 45.33 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.38 | 44.38 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 44.38 | 43.17 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 44.38 | 42.7 |
| TraesCS5A01G412200.1 | Wheat | plastid | 44.38 | 42.7 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 43.82 | 42.62 |
| CDY13405 | Canola | cytosol | 29.21 | 42.62 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 42.13 | 41.9 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.57 | 41.57 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.57 | 41.34 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 41.01 | 41.01 |
| CDY23272 | Canola | extracellular, golgi | 39.33 | 40.7 |
| CDX72284 | Canola | extracellular, golgi | 39.33 | 40.46 |
| CDY51486 | Canola | extracellular, golgi | 38.76 | 40.12 |
| CDX68715 | Canola | extracellular, golgi | 38.76 | 40.12 |
| Zm00001d034279_P001 | Maize | extracellular | 40.45 | 40.0 |
| CDY28236 | Canola | extracellular, golgi | 38.76 | 39.88 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 51.12 | 35.0 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 41.01 | 33.49 |
Protein Annotations
| EnsemblPlants:CDX94551 | EnsemblPlantsGene:GSBRNA2T00157802001 | GO:A0A078DZF9 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 |
| PANTHER:PTHR32254:SF11 | PFAM:PF06364 | ProteinID:CDX94551 | ProteinID:CDX94551.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EC14F4 | MapMan:35.2 | : | : | : | : |
Description
BnaC09g22850D
Coordinates
chrLK031882:-:983599..984300
Molecular Weight (calculated)
20260.0 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.617
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRRQKKTAK VVTGVMVLCM VAYIAGPSLY WHLNETIAES LHSSCPPCVC DCSSQPLLYI PDGLSNHSFL DCMRREEGSE ENESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCEQAR EKSDATLDEQ RRVSYMWELR ARQNGWKEGP KVVSSDVI
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCEQAR EKSDATLDEQ RRVSYMWELR ARQNGWKEGP KVVSSDVI
001: MTRRQKKTAK VVTVVMGLCI VAYIAGPSLY WHLNETIADS LHSSCPPCVC DCSSQPLLSI PDGLSNHSFL DCMRHEEGSE ESESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
Arabidopsis Description
Protein of unknown function (DUF1068) [Source:TAIR;Acc:AT4G04360]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.