Factsheet for HORVU4Hr1G086150.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT5G07250.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G526000.1	Wheat	plasma membrane	82.73	96.69
TraesCS4D01G350300.1	Wheat	plasma membrane	82.22	95.8
TraesCS4B01G356600.1	Wheat	plasma membrane	81.7	94.91
EER95642	Sorghum	cytosol, golgi, plasma membrane	66.75	79.45
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	65.72	78.46
Zm00001d027355_P001	Maize	plasma membrane	63.66	76.71
HORVU1Hr1G048610.3	Barley	plasma membrane	56.19	67.08
HORVU5Hr1G080690.2	Barley	plasma membrane	51.55	62.31
Solyc03g026080.2.1	Tomato	plasma membrane	50.0	61.01
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	50.0	61.01
HORVU7Hr1G056630.1	Barley	plasma membrane	51.03	60.74
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	49.48	60.57
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	51.03	60.37
KRG91456	Soybean	cytosol, golgi, plasma membrane	50.77	59.88
KRH09112	Soybean	plasma membrane	50.77	59.88
CDY47350	Canola	plasma membrane	48.2	59.37
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	48.71	59.25
CDY45976	Canola	plasma membrane	48.71	59.25
CDY67235	Canola	plasma membrane	48.71	59.25
Bra027622.1-P	Field mustard	plasma membrane	47.94	59.24
KRH35359	Soybean	cytosol, golgi, plasma membrane	50.26	59.09
KRH38564	Soybean	plasma membrane	50.0	58.79
VIT_16s0100g00640.t01	Wine grape	plasma membrane	49.23	58.77
CDY49197	Canola	plasma membrane	48.45	58.57
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	50.26	58.56
PGSC0003DMT400007890	Potato	plasma membrane	49.74	58.48
Bra005930.1-P	Field mustard	plasma membrane	48.2	57.54
CDX78286	Canola	plasma membrane	48.2	57.54
CDX98992	Canola	plasma membrane	50.26	57.35
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	51.29	57.35
CDX70021	Canola	plasma membrane	51.03	57.06
CDX81043	Canola	plasma membrane	47.94	57.06
AT5G07250.1	Thale cress	plasma membrane	50.52	56.65
AT1G12750.4	Thale cress	plasma membrane	43.04	54.4
CDX70020	Canola	mitochondrion, plasma membrane	45.1	54.01
Bra019783.1-P	Field mustard	plasma membrane	42.27	53.95
CDY66606	Canola	plasma membrane	42.27	53.95
Bra013673.1-P	Field mustard	plasma membrane	38.14	52.48
CDY53134	Canola	plasma membrane	42.01	51.91
CDY41251	Canola	plasma membrane	41.75	51.76
AT4G23070.1	Thale cress	plasma membrane	41.49	51.44
CDX98993	Canola	cytosol	40.21	49.06
CDY60266	Canola	plasma membrane	44.33	48.04
HORVU4Hr1G027850.1	Barley	peroxisome	46.13	47.23
Bra009280.1-P	Field mustard	cytosol	44.85	46.65
HORVU2Hr1G095170.6	Barley	mitochondrion	43.56	45.8
HORVU3Hr1G029090.1	Barley	plastid	16.49	42.11
HORVU0Hr1G006330.1	Barley	plastid	16.49	42.11

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	UniProt:A0A287PZ69	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G086150	EnsemblPlants:HORVU4Hr1G086150.3	InterPro:IPR035952
PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF21	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000B47EAB8	SEG:seg	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287PZ69]

Coordinates

chrchr4H:-:633377659..633386593

Molecular Weight (calculated)

42027.7 Da

IEP (calculated)

10.348

GRAVY (calculated)

0.379

Length

388 amino acids

Sequence
(BLAST)

001: VFILPTLPLL SPSSCAPSSH TSLLLQSQRH RFLHTTRRKG SSSVVRSTAT AQVVQPAAMA TSRADVEKGG SSPRKQDKGK VPAPLYPQHE GEREWTPWLV
101: PSILVANITV FTIAMYYNNC PAHNAKPGRD GHCVAGFLHR FSFQPLRQNP LLGPSSATLV KMGALVWDKV VHGHQGWRLF SCMWMHAGVL HLVANMLSLL
201: FIGLRLEQQF GYVRIGGIYL ISGVGGSVLS SLFIRSAVSV GASGALFGLL GAMLAELVSN WTIYTNKVAA VTTLLFVIAV NLVLGILPHV NNFAHIGGFL
301: TGFLLGFVLL MRPHFGWMER YRLPAGSPCT ARKYLPYQWA LMAVALALAV AGFAIGLAMV FRGANANSSC GWCHYLSCVP TASWTCAN

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.