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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • peroxisome 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, peroxisome, plasma membrane
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G356600.1 Wheat plasma membrane 96.7 96.41
TraesCS5A01G526000.1 Wheat plasma membrane 96.1 96.39
HORVU4Hr1G086150.3 Barley plastid 95.8 82.22
EER95642 Sorghum cytosol, golgi, plasma membrane 78.08 79.75
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 77.18 79.08
Zm00001d027355_P001 Maize plasma membrane 73.57 76.09
TraesCS1D01G187500.1 Wheat plasma membrane 66.37 68.42
TraesCS5D01G320400.1 Wheat plasma membrane 60.36 62.81
TraesCS7D01G270400.1 Wheat plasma membrane 60.66 61.59
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 57.96 60.88
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 59.76 60.67
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 57.66 60.38
Solyc03g026080.2.1 Tomato plasma membrane 57.66 60.38
CDY47350 Canola plasma membrane 56.46 59.68
KRG91456 Soybean cytosol, golgi, plasma membrane 58.86 59.57
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 57.06 59.56
CDY67235 Canola plasma membrane 57.06 59.56
CDY45976 Canola plasma membrane 57.06 59.56
Bra027622.1-P Field mustard plasma membrane 56.16 59.55
KRH09112 Soybean plasma membrane 58.56 59.27
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 59.16 59.16
PGSC0003DMT400007890 Potato plasma membrane 58.56 59.09
CDY49197 Canola plasma membrane 56.76 58.88
KRH35359 Soybean cytosol, golgi, plasma membrane 58.26 58.79
VIT_16s0100g00640.t01 Wine grape plasma membrane 57.06 58.46
KRH38564 Soybean plasma membrane 57.66 58.18
CDX98992 Canola plasma membrane 58.86 57.65
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 60.06 57.64
Bra005930.1-P Field mustard plasma membrane 56.16 57.54
CDX78286 Canola plasma membrane 56.16 57.54
CDX70021 Canola plasma membrane 59.76 57.35
CDX81043 Canola plasma membrane 55.86 57.06
AT5G07250.1 Thale cress plasma membrane 58.86 56.65
AT1G12750.4 Thale cress plasma membrane 50.75 55.05
TraesCS2D01G398500.1 Wheat plasma membrane 55.86 54.87
CDX70020 Canola mitochondrion, plasma membrane 53.15 54.63
Bra019783.1-P Field mustard plasma membrane 49.55 54.28
CDY66606 Canola plasma membrane 49.55 54.28
Bra013673.1-P Field mustard plasma membrane 45.65 53.9
CDY53134 Canola plasma membrane 50.15 53.18
CDY41251 Canola plasma membrane 49.85 53.04
AT4G23070.1 Thale cress plasma membrane 48.65 51.76
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 45.65 49.84
CDX98993 Canola cytosol 47.45 49.69
CDY60266 Canola plasma membrane 51.35 47.77
Bra009280.1-P Field mustard cytosol 52.85 47.19
TraesCS4D01G136600.2 Wheat plasma membrane 53.15 46.58
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF21InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS4D01G350300EnsemblPlants:TraesCS4D01G350300.1
SEG:seg:::::
Description
No Description!
Coordinates
chr4D:-:502576795..502579734
Molecular Weight (calculated)
36283.7 Da
IEP (calculated)
9.952
GRAVY (calculated)
0.384
Length
333 amino acids
Sequence
(BLAST)
001: MATSRADVER GGSSSPRKQQ QEKGKVPTPL YPQHEGEREW TPWLVPSILV ANITVFTIAM YYNNCPAHNA KPGRDGQCVA GFLHRFSFQP LRQNPLLGPS
101: SATLVKMGAL VWDKVVHGHQ GWRLFSCMWM HAGVLHLVAN MLSLLFVGLR LEQQFGYVRI GAIYLISGVG GSVLSSLFIR SAISVGASGA LFGLLGAMLA
201: ELLSNWTIYT NKVAAVTTLL FVIAVNLVLG ILPHVNNFAH IGGFLTGFLL GFVLLMRPHF GWMERYRLPA GSPCTARKYL PYQWALMAAA LALAVAGFAI
301: GLAMVFRGAN ANSSCGWCHY LSCVPTKSWT CAN
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.