Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G274500.1 | Wheat | plastid | 93.29 | 92.7 |
| TraesCS3B01G308400.1 | Wheat | plastid | 92.97 | 92.38 |
| HORVU3Hr1G071060.1 | Barley | plastid | 86.9 | 87.18 |
| TraesCS1A01G340600.1 | Wheat | plastid | 43.77 | 40.53 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 39.62 | 34.64 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 34.82 | 34.06 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 33.87 | 33.44 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 34.19 | 31.94 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 29.07 | 31.93 |
| AT3G16310.1 | Thale cress | plastid | 31.63 | 30.09 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 31.63 | 29.91 |
| KRH23409 | Soybean | mitochondrion | 31.63 | 29.91 |
| Bra027174.1-P | Field mustard | plastid | 31.31 | 29.34 |
| CDY30157 | Canola | plastid | 30.99 | 22.88 |
| Solyc03g120880.2.1 | Tomato | nucleus | 33.87 | 21.12 |
| CDX97739 | Canola | plastid | 31.31 | 14.69 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0031965 | InterPro:IPR007846 | InterPro:IPR012677 | InterPro:Nucleoporin_NUP53 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 | PANTHER:PTHR21527:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS3A01G274800 | EnsemblPlants:TraesCS3A01G274800.1 | TIGR:cd12441 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:503837087..503838845
Molecular Weight (calculated)
33609.9 Da
IEP (calculated)
9.724
GRAVY (calculated)
-0.447
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPSPSPPR RTPTTGGRQS PFFRDLARAI PSHRTSGSLD PSSTPPPPLF TLDDRLYAQD FSPDRSASNL LPVAPSPSPP TRASSASRPP SWDRSRGIPP
101: GPCSLGDWLV EPARKEVLAL PPPSPPPTRA ANEEVRSPVI PLPAPPRTAP SASVTGADGE EWVTVFGFTA RETNLVLREF GKCGVILRHC SGPRDGNWLH
201: ILYQHQYDAR RALEKNGIQL FSGVAIGVKI TDPAQLQMDE KMSESNYKGF MVSLPSKSSI QNAGASSNLG DLPRPYDPKA GRNINRDMGC STGSVAMPAK
301: SVLVKTMDLI FGI
101: GPCSLGDWLV EPARKEVLAL PPPSPPPTRA ANEEVRSPVI PLPAPPRTAP SASVTGADGE EWVTVFGFTA RETNLVLREF GKCGVILRHC SGPRDGNWLH
201: ILYQHQYDAR RALEKNGIQL FSGVAIGVKI TDPAQLQMDE KMSESNYKGF MVSLPSKSSI QNAGASSNLG DLPRPYDPKA GRNINRDMGC STGSVAMPAK
301: SVLVKTMDLI FGI
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.