Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 96.03 | 96.03 |
| Os01t0242900-01 | Rice | plasma membrane | 74.17 | 71.79 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 63.58 | 65.75 |
| Zm00001d039619_P003 | Maize | cytosol | 50.33 | 52.78 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 49.01 | 51.75 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 39.07 | 48.76 |
| AT1G17080.1 | Thale cress | plasma membrane | 49.67 | 48.7 |
| CDX83927 | Canola | plasma membrane | 50.99 | 48.12 |
| Bra040984.1-P | Field mustard | plasma membrane | 49.67 | 48.08 |
| CDX96793 | Canola | plasma membrane | 49.67 | 48.08 |
| CDY21766 | Canola | plasma membrane | 45.03 | 46.9 |
| CDX81802 | Canola | plasma membrane | 45.03 | 46.26 |
| KRH21829 | Soybean | plasma membrane | 49.01 | 46.25 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 46.36 | 46.05 |
| AT1G53560.1 | Thale cress | plasma membrane | 46.36 | 45.75 |
| CDX75777 | Canola | cytosol | 41.06 | 44.6 |
| CDY24088 | Canola | cytosol | 45.03 | 44.44 |
| Bra026690.1-P | Field mustard | plasma membrane | 43.71 | 44.3 |
| Bra039680.1-P | Field mustard | cytosol | 44.37 | 43.79 |
| CDX98477 | Canola | cytosol | 39.74 | 43.17 |
| CDX97586 | Canola | cytosol | 39.74 | 42.86 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 50.99 | 41.18 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 35.1 | 40.15 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 50.33 | 39.18 |
| KRH13519 | Soybean | cytosol | 42.38 | 36.99 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 26.49 | 36.04 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 37.75 | 34.76 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 37.75 | 34.76 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 47.02 | 33.02 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 50.33 | 30.16 |
| TraesCS7D01G345900.1 | Wheat | plastid | 29.8 | 29.8 |
| Solyc07g061970.2.1 | Tomato | cytosol | 38.41 | 29.74 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 35.76 | 24.32 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G171700.1 | EnsemblPlantsGene:TraesCS3D01G171700 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF7 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:152552448..152554956
Molecular Weight (calculated)
15897.0 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.056
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGDEVAKAK AAAAGVGGVG EYGTFHGPPS YPPPRPPVGH PQPAPPPGLH GQREPNSRHR GGYQAGNAQD YEAGARGHKH DRLPCFGIGM GWFLFVLGFF
101: LGAIPWYVGA FLLWCSRVDY REKPGYVACT IAAVLATIAV IIGATAGAHV Y
101: LGAIPWYVGA FLLWCSRVDY REKPGYVACT IAAVLATIAV IIGATAGAHV Y
001: MGKEKDKNRG ASPSSYGTFQ GVPTYPPPSY PHPPSHHPVI GIPQPSPPPG SPHHDISVHQ YIQEHQTVAG YPVSQGRPAR QNRLPCCGLG LGWFLFIIGF
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
Arabidopsis Description
At1g53560 [Source:UniProtKB/TrEMBL;Acc:Q9LPH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.