Factsheet for Bra016620.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra026434.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G17080.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G17080.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G17080.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G17080.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83927	Canola	plasma membrane	61.11	96.25
Bra040984.1-P	Field mustard	plasma membrane	58.73	94.87
AT1G17080.1	Thale cress	plasma membrane	52.78	86.36
Bra026690.1-P	Field mustard	plasma membrane	45.63	77.18
VIT_19s0135g00070.t01	Wine grape	plasma membrane	34.92	61.54
Os05t0564800-01	Rice	plasma membrane	28.57	56.69
KRH21829	Soybean	plasma membrane	34.92	55.0
Bra039680.1-P	Field mustard	cytosol	32.14	52.94
Os01t0242900-01	Rice	plasma membrane	32.54	52.56
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	30.95	51.66
Zm00001d009578_P001	Maize	plasma membrane	34.13	51.19
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	30.16	50.33
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	30.16	50.0
EES18686	Sorghum	plasma membrane	34.13	49.43
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	23.41	48.76
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	27.38	47.26
Zm00001d011536_P001	Maize	plasma membrane	33.73	46.45
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	33.73	45.45
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	33.33	45.16
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	33.33	44.92
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	33.33	44.92
Zm00001d039619_P003	Maize	cytosol	25.4	44.44
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	30.56	43.5
KRH13519	Soybean	cytosol	29.76	43.35
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	32.94	42.78
Os01t0667100-01	Rice	plasma membrane	31.35	42.7
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	26.98	41.46
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	26.59	40.85
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	17.86	40.54
TraesCS1A01G399600.1	Wheat	cytosol	30.56	39.9
GSMUA_Achr6P13730_001	Banana	plasma membrane	30.95	36.28
Bra032348.1-P	Field mustard	cytosol	24.21	36.09
Solyc07g061970.2.1	Tomato	cytosol	26.98	34.87
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	25.4	28.83

Protein Annotations

EnsemblPlants:Bra016620.1	EnsemblPlants:Bra016620.1-P	EnsemblPlantsGene:Bra016620	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025456CE
UniProt:M4DJE2	MapMan:35.1	:	:	:	:

Description

AT1G17080 (E=4e-060) | unknown protein

Coordinates

chrA08:+:19315418..19317170

Molecular Weight (calculated)

28416.5 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.212

Length

252 amino acids

Sequence
(BLAST)

001: MGQGEEDKSK GFADEAGTHH QYGTFQGVSN YPPPRPQNSP PVTGFPQPSA PPRVYDSAPP HYAHGYQTVP VHGIAEGRPV HVRQRRLPCC GIGLGWFLFI
101: VGFFLGAIPW YVGMFIMIVG RRIDHREKPG YIACTIAAIL ATIAVILGVT KGAEDWSYKE PSSIFLGQQL LVHRVYNYTH IPKSINLKTI VRSIRFRMVS
201: IKNITQFHLN DLIQKFQLLT KYWQPRVHPN MDGNKPTSFL SWVPKTPQQL TV

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.