Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24088 | Canola | cytosol | 93.46 | 93.46 |
| AT1G53560.1 | Thale cress | plasma membrane | 71.24 | 71.24 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 50.98 | 54.55 |
| Bra040984.1-P | Field mustard | plasma membrane | 52.29 | 51.28 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 40.52 | 51.24 |
| Os01t0242900-01 | Rice | plasma membrane | 48.37 | 47.44 |
| KRH21829 | Soybean | plasma membrane | 48.37 | 46.25 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 45.1 | 45.7 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 42.48 | 44.52 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 43.79 | 44.37 |
| Bra026690.1-P | Field mustard | plasma membrane | 43.14 | 44.3 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 47.06 | 43.9 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 47.06 | 43.9 |
| Os05t0564800-01 | Rice | plasma membrane | 35.95 | 43.31 |
| EES18686 | Sorghum | plasma membrane | 48.37 | 42.53 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 41.83 | 42.11 |
| Zm00001d009578_P001 | Maize | plasma membrane | 45.1 | 41.07 |
| Zm00001d039619_P003 | Maize | cytosol | 37.25 | 39.58 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.1 | 38.74 |
| KRH13519 | Soybean | cytosol | 42.48 | 37.57 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 42.48 | 36.72 |
| Os01t0667100-01 | Rice | plasma membrane | 43.79 | 36.22 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.79 | 35.83 |
| Zm00001d011536_P001 | Maize | plasma membrane | 42.48 | 35.52 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 43.14 | 35.48 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.14 | 35.29 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 42.48 | 34.76 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 42.48 | 33.51 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 52.94 | 32.14 |
| Bra032348.1-P | Field mustard | cytosol | 35.29 | 31.95 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 39.22 | 31.09 |
| Solyc07g061970.2.1 | Tomato | cytosol | 38.56 | 30.26 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 42.48 | 30.23 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 36.6 | 25.23 |
Protein Annotations
| EnsemblPlants:Bra039680.1 | EnsemblPlants:Bra039680.1-P | EnsemblPlantsGene:Bra039680 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253E788 |
| UniProt:M4FF08 | MapMan:35.1 | : | : | : | : |
Description
AT1G53560 (E=2e-051) | unknown protein
Coordinates
chrA06:+:569742..570647
Molecular Weight (calculated)
16993.6 Da
IEP (calculated)
8.924
GRAVY (calculated)
-0.113
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKEKDKERV ASPTSYGTFQ GFPIYPPPLH PRPPQHHPVS GFPQPSQPPR ATHHDLSVQQ YIQEHQTVPG YDVAEGRHGR RERLPCCGIG IGWFLFITGF
101: LLGSIPWYIG VFILVCAKIN PREKPGYIAC AIAAVLATIA IVFGFMGGRE VWS
101: LLGSIPWYIG VFILVCAKIN PREKPGYIAC AIAAVLATIA IVFGFMGGRE VWS
001: MGKEKDKNRG ASPSSYGTFQ GVPTYPPPSY PHPPSHHPVI GIPQPSPPPG SPHHDISVHQ YIQEHQTVAG YPVSQGRPAR QNRLPCCGLG LGWFLFIIGF
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
Arabidopsis Description
At1g53560 [Source:UniProtKB/TrEMBL;Acc:Q9LPH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.