Factsheet for Zm00001d009578_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d016570_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G17080.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G17080.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT1G17080.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT1G17080.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT1G17080.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18686	Sorghum	plasma membrane	78.57	75.86
Os05t0564800-01	Rice	plasma membrane	51.19	67.72
VIT_19s0135g00070.t01	Wine grape	plasma membrane	50.0	58.74
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	64.88	58.29
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	66.07	57.22
AT1G17080.1	Thale cress	plasma membrane	51.79	56.49
Zm00001d011536_P001	Maize	plasma membrane	60.71	55.74
TraesCS1A01G399600.1	Wheat	cytosol	63.69	55.44
Bra040984.1-P	Field mustard	plasma membrane	50.6	54.49
CDX96793	Canola	plasma membrane	50.6	54.49
CDX83927	Canola	plasma membrane	51.79	54.38
CDY21766	Canola	plasma membrane	45.83	53.1
CDX81802	Canola	plasma membrane	46.43	53.06
KRH21829	Soybean	plasma membrane	49.4	51.88
AT1G53560.1	Thale cress	plasma membrane	45.83	50.33
Bra026690.1-P	Field mustard	plasma membrane	44.05	49.66
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	50.6	48.02
CDY24088	Canola	cytosol	41.07	45.1
Bra039680.1-P	Field mustard	cytosol	41.07	45.1
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	32.14	44.63
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	43.45	44.51
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	42.86	43.9
Zm00001d039619_P003	Maize	cytosol	37.5	43.75
CDX75777	Canola	cytosol	35.12	42.45
CDX98477	Canola	cytosol	34.52	41.73
KRH13519	Soybean	cytosol	42.86	41.62
CDX97586	Canola	cytosol	33.93	40.71
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	30.95	39.39
Zm00001d037067_P001	Maize	cytosol, plasma membrane, plastid, vacuole	35.71	37.27
Solyc07g061970.2.1	Tomato	cytosol	41.67	35.9
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	51.19	34.13
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	41.67	31.53

Protein Annotations

EMBL:BT068864	EMBL:EU959101	EnsemblPlants:Zm00001d009578_P001	EnsemblPlants:Zm00001d009578_T001	EnsemblPlantsGene:Zm00001d009578	EntrezGene:100281992
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0016020
GO:GO:0016021	InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF16	ProteinID:AQK92177.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000182C1E3	UniProt:B6T286	MapMan:35.2	:	:

Description

Ribosomal protein L18ae family

Coordinates

chr8:+:71548476..71550482

Molecular Weight (calculated)

17714.2 Da

IEP (calculated)

7.909

GRAVY (calculated)

-0.087

Length

168 amino acids

Sequence
(BLAST)

001: MGGGHEEQEG GGAKAGGYSS GLPPSEPPQE YGYGTFQGPR HPPVGFPQPA PPPGFGGGGG YHNQQQPYAH AETYYAQGYQ AVPGYGPVAE GRPVRMRRLP
101: CCGLGLGWCL FIAGFFLAAI PWYIGAFVLI CVRVHDHREK PGYVACTIAA VVAAVAIFLG VTKGTHVW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.